Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_P01
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1546 + 27602598-27602917,27602995-27603052,27603130-276032...    29   2.4  
02_05_1339 + 35793795-35794922,35795009-35795233,35795314-35795460     28   7.4  

>07_03_1546 + 27602598-27602917,27602995-27603052,27603130-27603252,
            27603896-27603992,27604095-27604131,27604244-27604349,
            27604547-27604604,27604705-27604802,27604911-27605030,
            27605622-27605667,27606336-27606522,27606747-27607263,
            27607361-27607453,27608101-27608286,27608364-27608574,
            27609263-27609387,27609518-27609664,27610114-27610236,
            27610445-27610799,27611076-27611305,27611785-27611877
          Length = 1109

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
 Frame = -2

Query: 463  NHSIDFSIIAVSINKICFVSVYIPHXTSSIFDEIEVIISQLPKPVLILGDFNAQ-HQAWG 287
            NH+   S+ A SIN   + ++   + T      +    SQ   P     D+  Q + A+G
Sbjct: 759  NHAASTSVHAGSINSSAYPTIQPSYSTPDPSQNLYQGTSQYAVPSNQYQDYQQQSNTAYG 818

Query: 286  STNSSYYGARILDILDSNNFCILNTGVATRRTQPHEGISA 167
            + NS+Y        + SN   +++   AT    P + + A
Sbjct: 819  TYNSTYSQQPTQMFVPSNTTPVISQPNATPAPVPQQPVKA 858


>02_05_1339 + 35793795-35794922,35795009-35795233,35795314-35795460
          Length = 499

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 108 SSTYDSDHYPILITLPKKLVRTKFRRPPR 22
           S  +DSD +P +    K L+R   R PPR
Sbjct: 244 SLDFDSDPWPTISDSAKDLIRRMLRSPPR 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,544,513
Number of Sequences: 37544
Number of extensions: 322985
Number of successful extensions: 603
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)