Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_P01
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    35   0.044
U80436-7|AAC71109.1| 1638|Caenorhabditis elegans Uncoordinated p...    33   0.18 
U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated p...    33   0.18 
U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated p...    33   0.18 
AF048835-1|AAC12932.1| 1638|Caenorhabditis elegans guanine nucle...    33   0.18 
AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucle...    33   0.18 
AF025468-6|AAB71043.2|  283|Caenorhabditis elegans Hypothetical ...    32   0.41 
Z81108-5|CAB03235.1|  288|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF034258-1|AAC82328.1|  288|Caenorhabditis elegans exonuclease I...    29   2.9  
Z81108-6|CAI79211.1|  186|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z68753-6|CAD45610.1|  597|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z68753-5|CAB54512.2|  613|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z68753-4|CAB54511.2|  606|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AY043268-1|AAK85706.1|  606|Caenorhabditis elegans CCR4 protein.       28   5.0  
Z81123-4|CAB03367.2|  986|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z54281-8|CAA91051.2|  986|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
 Frame = -2

Query: 406 SVYIPHXTSS-----IFDEIEVIISQLPKPVLILGDFNAQHQAWGSTNS-SYYGARILDI 245
           +VY+P  +SS     +  +   I     K + I GD NA H AW S  S    G  + ++
Sbjct: 5   NVYVPPRSSSSNHARLMTDFSNIFQTKSKSI-ISGDVNAHHSAWHSEGSEDTRGRELAEL 63

Query: 244 LDSN-NFCILNTGVATRRTQPHEGISAPDLSLTT 146
           +D + +  I N  V TR       IS+PD+++ T
Sbjct: 64  IDLHPDLIIQNEQVHTRADT--YSISSPDITICT 95


>U80436-7|AAC71109.1| 1638|Caenorhabditis elegans Uncoordinated
           protein 73, isoform b protein.
          Length = 1638

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -2

Query: 208 VATRRTQPHEGISAPDLSLTTRWLSFLTD 122
           +ATR  +P +G+  PDL  TT ++S LTD
Sbjct: 231 IATRILKPSKGVKNPDLEATTPYISNLTD 259


>U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated
           protein 73, isoform f protein.
          Length = 2140

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -2

Query: 208 VATRRTQPHEGISAPDLSLTTRWLSFLTD 122
           +ATR  +P +G+  PDL  TT ++S LTD
Sbjct: 231 IATRILKPSKGVKNPDLEATTPYISNLTD 259


>U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated
           protein 73, isoform a protein.
          Length = 2488

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -2

Query: 208 VATRRTQPHEGISAPDLSLTTRWLSFLTD 122
           +ATR  +P +G+  PDL  TT ++S LTD
Sbjct: 231 IATRILKPSKGVKNPDLEATTPYISNLTD 259


>AF048835-1|AAC12932.1| 1638|Caenorhabditis elegans guanine
           nucleotide exchange factorUNC-73B protein.
          Length = 1638

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -2

Query: 208 VATRRTQPHEGISAPDLSLTTRWLSFLTD 122
           +ATR  +P +G+  PDL  TT ++S LTD
Sbjct: 231 IATRILKPSKGVKNPDLEATTPYISNLTD 259


>AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine
           nucleotide exchange factorUNC-73A protein.
          Length = 2488

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -2

Query: 208 VATRRTQPHEGISAPDLSLTTRWLSFLTD 122
           +ATR  +P +G+  PDL  TT ++S LTD
Sbjct: 231 IATRILKPSKGVKNPDLEATTPYISNLTD 259


>AF025468-6|AAB71043.2|  283|Caenorhabditis elegans Hypothetical
           protein T27A1.2 protein.
          Length = 283

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 392 WNIHRNKTYFINTYC-YYREINAMVC 466
           W  H+N  YFIN +C Y++++N   C
Sbjct: 17  WATHQNVHYFINLFCTYHKDVNKSPC 42


>Z81108-5|CAB03235.1|  288|Caenorhabditis elegans Hypothetical
           protein R09B3.1a protein.
          Length = 288

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 13/98 (13%)
 Frame = -2

Query: 553 LXVREDRTDGYAGVALLVHNTIPFDHIPIANHSIDFS--IIAVSINKICFVSVYIPHXTS 380
           L V  ++  GYAGV LL        H  I +   D +  +I    +K  F+  Y+P+  +
Sbjct: 89  LVVSTEKNGGYAGVGLLSKCAPMKVHKGIGDPEFDTAGRLIIAEFSKFYFIGAYVPNSGA 148

Query: 379 SIFD-----EIEVIISQL------PKPVLILGDFNAQH 299
            + +       E ++++        KPV+  GD N  H
Sbjct: 149 KLVNLEKRGRWEKLLTEKMKEMDEKKPVIYGGDLNVAH 186


>AF034258-1|AAC82328.1|  288|Caenorhabditis elegans exonuclease III
           homolog protein.
          Length = 288

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 13/98 (13%)
 Frame = -2

Query: 553 LXVREDRTDGYAGVALLVHNTIPFDHIPIANHSIDFS--IIAVSINKICFVSVYIPHXTS 380
           L V  ++  GYAGV LL        H  I +   D +  +I    +K  F+  Y+P+  +
Sbjct: 89  LVVSTEKNGGYAGVGLLSKCAPMKVHKGIGDPEFDTAGRLIIAEFSKFYFIGAYVPNSGA 148

Query: 379 SIFD-----EIEVIISQL------PKPVLILGDFNAQH 299
            + +       E ++++        KPV+  GD N  H
Sbjct: 149 KLVNLEKRGRWEKLLTEKMKEMDEKKPVIYGGDLNVAH 186


>Z81108-6|CAI79211.1|  186|Caenorhabditis elegans Hypothetical
           protein R09B3.1b protein.
          Length = 186

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -2

Query: 553 LXVREDRTDGYAGVALLVHNTIPFDHIPIANHSIDFS--IIAVSINKICFVSVYIPH 389
           L V  ++  GYAGV LL        H  I +   D +  +I    +K  F+  Y+P+
Sbjct: 89  LVVSTEKNGGYAGVGLLSKCAPMKVHKGIGDPEFDTAGRLIIAEFSKFYFIGAYVPN 145


>Z68753-6|CAD45610.1|  597|Caenorhabditis elegans Hypothetical
           protein ZC518.3c protein.
          Length = 597

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -2

Query: 406 SVYIPHXTSSIFDEI--EVIISQLPKPVLILGDFNA 305
           S+ + H  S + +E+  +  I+Q   PVLI GDFN+
Sbjct: 403 SMMLTHEVSRVLEEVSKKYQITQQQVPVLICGDFNS 438


>Z68753-5|CAB54512.2|  613|Caenorhabditis elegans Hypothetical
           protein ZC518.3b protein.
          Length = 613

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -2

Query: 406 SVYIPHXTSSIFDEI--EVIISQLPKPVLILGDFNA 305
           S+ + H  S + +E+  +  I+Q   PVLI GDFN+
Sbjct: 419 SMMLTHEVSRVLEEVSKKYQITQQQVPVLICGDFNS 454


>Z68753-4|CAB54511.2|  606|Caenorhabditis elegans Hypothetical
           protein ZC518.3a protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -2

Query: 406 SVYIPHXTSSIFDEI--EVIISQLPKPVLILGDFNA 305
           S+ + H  S + +E+  +  I+Q   PVLI GDFN+
Sbjct: 412 SMMLTHEVSRVLEEVSKKYQITQQQVPVLICGDFNS 447


>AY043268-1|AAK85706.1|  606|Caenorhabditis elegans CCR4 protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -2

Query: 406 SVYIPHXTSSIFDEI--EVIISQLPKPVLILGDFNA 305
           S+ + H  S + +E+  +  I+Q   PVLI GDFN+
Sbjct: 412 SMMLTHEVSRVLEEVSKKYQITQQQVPVLICGDFNS 447


>Z81123-4|CAB03367.2|  986|Caenorhabditis elegans Hypothetical
           protein F46C5.6 protein.
          Length = 986

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
 Frame = +2

Query: 407 NKTYFINTYCYYREINAMVCN------RNVVKRYCIMN 502
           +K++ +NTYC   +I+  +C       RNV+K+ C  N
Sbjct: 403 DKSWVLNTYCKMVQISDELCEGPQKNIRNVLKKTCCFN 440


>Z54281-8|CAA91051.2|  986|Caenorhabditis elegans Hypothetical
           protein F46C5.6 protein.
          Length = 986

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
 Frame = +2

Query: 407 NKTYFINTYCYYREINAMVCN------RNVVKRYCIMN 502
           +K++ +NTYC   +I+  +C       RNV+K+ C  N
Sbjct: 403 DKSWVLNTYCKMVQISDELCEGPQKNIRNVLKKTCCFN 440


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,707,294
Number of Sequences: 27780
Number of extensions: 303267
Number of successful extensions: 639
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)