Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_O21
(483 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c... 29 0.28
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 27 2.0
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac... 26 2.6
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 26 2.6
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 26 2.6
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 26 3.4
SPCC1393.14 |||nuclear telomere cap complex subunit Ten1|Schizos... 25 4.5
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 6.0
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 25 6.0
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces... 25 7.9
>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 29.5 bits (63), Expect = 0.28
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = -2
Query: 221 RLCER--DYRCQRIHQPMVCCYCCTN*HNCQ*NSPSHCSWLETCYHF 87
R CE+ +Y+C R H C C + C HC W + C F
Sbjct: 97 RFCEKCQEYKCDRSHH---CSQC----NKCILRMDHHCMWFKNCVGF 136
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 26.6 bits (56), Expect = 2.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 102 LQPATMRWRILLTIVSVCTAIAAYHWLMDPL 194
LQ IL + VC A+AA H+L PL
Sbjct: 153 LQHRLTEGEILKILADVCDAVAAMHYLDPPL 183
>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 26.2 bits (55), Expect = 2.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 97 AITSVKRRSKAFKSSTSSLFER 32
AI VK+R+K FK S LF+R
Sbjct: 3 AINIVKKRTKPFKRHQSDLFKR 24
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 2.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 98 MSPTSYNEMENSTDNCVSLYSNSSIPLVDGSS 193
MS S NE + N S Y N+S+P +D ++
Sbjct: 417 MSKLSLNEQPAAPSNSNSQYMNTSMPTLDSTN 448
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 2.6
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 101 SPTSYNEMENSTDNCVSLYSNSSIPLVDGSSDTCSLAHTVFVESSLF 241
S +S ++ T + +S S S P DGS D+ +AH + S F
Sbjct: 241 SHSSIGDLTTITQSSISSGSGSFKPSWDGSFDSSLMAHQSYGTSPAF 287
>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 25.8 bits (54), Expect = 3.4
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 72 ERRLTEVIACLQPATMRWRILLTIVSVCTAIAAYHWLMDPLTPV 203
+RRL I W LL +V VC + L+ P+ PV
Sbjct: 10 QRRLVREINKFSSFESNWLFLLFLVRVCRQLKTVTVLIVPVLPV 53
>SPCC1393.14 |||nuclear telomere cap complex subunit
Ten1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 102
Score = 25.4 bits (53), Expect = 4.5
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +2
Query: 143 CVSLYSNSSIPLVDGSSD-TCSL 208
CV Y N + L+DGSS TC +
Sbjct: 26 CVQSYKNGILRLIDGSSSVTCDV 48
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.0 bits (52), Expect = 6.0
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 95 SMSPTSYNEMENSTDNCVSLYSNSSIPLVDGSSDTCSLAHTVFVESSL 238
S S TS + + +S+ N + S +S L S+ + SLA + SSL
Sbjct: 82 SSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSL 129
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 25.0 bits (52), Expect = 6.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 110 SYNEMENSTDNCVSLYSNSSIPLVDG 187
SY S DNC+ L+S S LVDG
Sbjct: 1387 SYINDSFSVDNCLRLFSWSHSLLVDG 1412
>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 408
Score = 24.6 bits (51), Expect = 7.9
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -3
Query: 169 AAIAVQTDTIVSRILHLIVAGWRHAITSVKRRSKAFKSSTSSLFERHYLILKD 11
+AI++Q + +L+ GW SVKR + K S++++ RH + D
Sbjct: 178 SAISLQWKKTLECFTNLL--GWNSESASVKRTTSFSKKSSANMI-RHLTVCND 227
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,848,072
Number of Sequences: 5004
Number of extensions: 35837
Number of successful extensions: 112
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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