Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_O21
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0014 + 4955759-4956106,4956229-4956277,4956372-4956579,495...    29   2.0  
09_02_0167 + 5221910-5222516,5222826-5224642                           29   2.6  
09_02_0146 + 4953007-4953297,4954105-4954341,4954592-4954669,495...    29   2.6  
06_01_0220 - 1673657-1675765                                           28   4.5  
10_01_0253 + 2661264-2661872,2662055-2662875,2662959-2663340           27   6.0  
07_03_0170 + 14679746-14679936,14680111-14680208,14680460-146806...    27   6.0  

>03_02_0014 +
           4955759-4956106,4956229-4956277,4956372-4956579,
           4956700-4956874,4956981-4957046,4957150-4957263,
           4957366-4957482,4957589-4957715,4957826-4958112,
           4958209-4958399,4958937-4959022,4959117-4959193,
           4959330-4959473
          Length = 662

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 175 WYAAIAVQTDTIVSRILHLIVAGWRHAITSVKRRSKAFKSSTSSL 41
           W AAIA  T  I+S +   I    +H +  VK   K     ++SL
Sbjct: 291 WVAAIAPLTSVIISTLFVYITRADKHGVVIVKYIKKGINPPSASL 335


>09_02_0167 + 5221910-5222516,5222826-5224642
          Length = 807

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 31/134 (23%), Positives = 62/134 (46%), Gaps = 6/134 (4%)
 Frame = -3

Query: 394 LGFRISLPVSSQDMLKSLSMERVRAVMMLGATTFVCTPIMNSKTNNVEVTAKKG*FHKDC 215
           LG ++   + SQ   KSL  E   +VM L A+ F    +M +  N+V + + +   ++  
Sbjct: 17  LGGQVLNEIRSQFGKKSLIFEVENSVMEL-ASEF---RVMQAFINHVGMCSHQNAAYEAW 72

Query: 214 VSETTGV---RGSINQWYAAIAVQTDT---IVSRILHLIVAGWRHAITSVKRRSKAFKSS 53
           + E   V      I + YA +  QT     ++  +LH  +  W H  T +K+     +  
Sbjct: 73  LDEVKSVGFDAEDIIEEYAYLIAQTSNEGGLIKSVLHRSINAWCHIATQLKQIEARLQKL 132

Query: 52  TSSLFERHYLILKD 11
           T ++ +R+ +++ +
Sbjct: 133 T-AMKDRYGILISE 145


>09_02_0146 +
           4953007-4953297,4954105-4954341,4954592-4954669,
           4954991-4955167,4955705-4955761,4955988-4956174,
           4956910-4957055,4957213-4957395,4957860-4957970,
           4959386-4959505,4959596-4959740,4960001-4960164,
           4960816-4960902,4961062-4961390,4963426-4963507,
           4963616-4963746,4963976-4964225,4965112-4965393,
           4966780-4966986
          Length = 1087

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -3

Query: 142 IVSRILHLIVAGWRHAITSVKRRSKAFKSSTSSLFERHYLILKDP 8
           I+S  L L VA   H    +KRR ++++  T S+  RH+L L  P
Sbjct: 751 ILSSKLILYVAAILHVF--IKRRWQSWEDGTQSMIVRHFLTLSLP 793


>06_01_0220 - 1673657-1675765
          Length = 702

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 59  FESF*ASFN*SDSMSPTSYNEMENSTDNCVSLYSNSSIPLVDGSSDTCSL 208
           FE+F AS      + P +   ++  TD+C + Y N     V G  DTC+L
Sbjct: 404 FEAFSASA--PGRIDPATGYLLDELTDDCHADYRNLMAAAVRGDFDTCAL 451


>10_01_0253 + 2661264-2661872,2662055-2662875,2662959-2663340
          Length = 603

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 146 VSLYSN-SSIPLVDGSSDTCSLAHTVFVESSLFCCDLYIIGFAIHDWST 289
           VS+Y   ++I L   S       + + V  ++ CC  ++  FA H W+T
Sbjct: 238 VSVYLPFAAIGLFHNSHRQAYNRYDIKVTYTILCCTAFVEAFAAHGWNT 286


>07_03_0170 +
           14679746-14679936,14680111-14680208,14680460-14680605,
           14680933-14680977
          Length = 159

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 228 NHPFFAVTSTLLVLLFMIGV 287
           NHP  A T+T+L+LL ++GV
Sbjct: 2   NHPSSAATATVLLLLALLGV 21


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,075,236
Number of Sequences: 37544
Number of extensions: 207390
Number of successful extensions: 528
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)