Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_O21
         (483 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2281| Best HMM Match : Ras (HMM E-Value=3.4e-06)                    31   0.38 
SB_24685| Best HMM Match : 7tm_1 (HMM E-Value=7.4e-06)                 27   8.1  
SB_24756| Best HMM Match : 7tm_1 (HMM E-Value=2e-08)                   27   8.1  

>SB_2281| Best HMM Match : Ras (HMM E-Value=3.4e-06)
          Length = 138

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 22/62 (35%), Positives = 32/62 (51%)
 Frame = +2

Query: 107 TSYNEMENSTDNCVSLYSNSSIPLVDGSSDTCSLAHTVFVESSLFCCDLYIIGFAIHDWS 286
           T YN M N  D C  LY    I +VD +       +T F +SSL   D +++ FAI+  S
Sbjct: 7   TFYNLMFNQIDYCGKLYD---IEVVDSAGQE---EYTSFRDSSLATGDAFLVLFAINSAS 60

Query: 287 TY 292
           ++
Sbjct: 61  SW 62


>SB_24685| Best HMM Match : 7tm_1 (HMM E-Value=7.4e-06)
          Length = 311

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +3

Query: 177 WLMDPLTPVVSLTQSLWNHPFFAVTST----LLVLLFMIGVHTKVV 302
           W    L   + +T   WN+P F V  +    L+++LF  G   KVV
Sbjct: 60  WSFSILVGALRMTFPHWNYPLFLVIVSFFIPLIIILFSYGTIYKVV 105


>SB_24756| Best HMM Match : 7tm_1 (HMM E-Value=2e-08)
          Length = 690

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 15/107 (14%)
 Frame = +3

Query: 48  LVDDLKAFERRLTEVIACLQPATMRWRILLTIVSVCTAI----AAYHWLMDPLTPVVSLT 215
           LV  + A ERR+ + +  L        +L+T+V +   I    A Y WL+D L  +V   
Sbjct: 394 LVVAVVASERRMHKTVNFLIVNMSVSDLLVTVVYMPRVISLSYAGYEWLLDGLAGLVFCK 453

Query: 216 QSL-WNHPFFAVT---------STLLVLLFMIGVH-TKVVAPSIITA 323
            S+ +N    AVT            L ++F +G H T+  +  IITA
Sbjct: 454 MSVCFNQTSIAVTIFTVIAISLDRFLAVVFPLGRHFTETTSRVIITA 500


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,452,856
Number of Sequences: 59808
Number of extensions: 266417
Number of successful extensions: 826
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)