Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_O21
         (483 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60250.1 68414.m06785 zinc finger (B-box type) family protein...    31   0.41 
At5g35210.2 68418.m04175 peptidase M50 family protein / sterol-r...    30   0.71 
At5g35210.1 68418.m04174 peptidase M50 family protein / sterol-r...    30   0.71 
At5g13290.2 68418.m01527 protein kinase family protein contains ...    29   1.6  
At5g13290.1 68418.m01526 protein kinase family protein contains ...    28   2.9  
At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD fin...    28   3.8  
At3g56690.1 68416.m06306 calmodulin-binding protein identical to...    27   5.0  
At5g37220.1 68418.m04470 zinc finger (C3HC4-type RING finger) fa...    27   6.6  
At5g26340.1 68418.m03148 hexose transporter, putative strong sim...    27   6.6  

>At1g60250.1 68414.m06785 zinc finger (B-box type) family protein
           contains similarity to zinc finger protein GI:3618320
           from [Oryza sativa]
          Length = 251

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = -2

Query: 302 HYLCMYSNHE*QNQ*CRGHSKKGMIPQRLCERDYRCQRIHQPMVCCYCCTN*HNCQ*NSP 123
           H +   +N+  Q Q   GH ++  + +R C  D  C+R    M C  C  +  N     P
Sbjct: 103 HVVHHNNNNNHQQQHVGGHQRRAEMFERSCHGDNNCERWMFAMRCELCVASNSNAVVYCP 162

Query: 122 SH 117
           +H
Sbjct: 163 TH 164


>At5g35210.2 68418.m04175 peptidase M50 family protein /
           sterol-regulatory element binding protein (SREBP) site 2
           protease family protein contains PFam PF02163:
           sterol-regulatory element binding protein (SREBP) site 2
           protease
          Length = 1409

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +2

Query: 98  MSPTSYNEMENSTDNCVSLYSNSSIPLVDGSSDTCSLAHTVFVESSLFCCD 250
           ++ +S NE ++    C +  SN     +DG+SD C +     ++ +L CCD
Sbjct: 380 VTDSSTNESKDLDSRCTNGGSNEVSSDLDGNSDECRICG---MDGTLLCCD 427


>At5g35210.1 68418.m04174 peptidase M50 family protein /
           sterol-regulatory element binding protein (SREBP) site 2
           protease family protein contains PFam PF02163:
           sterol-regulatory element binding protein (SREBP) site 2
           protease
          Length = 1576

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +2

Query: 98  MSPTSYNEMENSTDNCVSLYSNSSIPLVDGSSDTCSLAHTVFVESSLFCCD 250
           ++ +S NE ++    C +  SN     +DG+SD C +     ++ +L CCD
Sbjct: 380 VTDSSTNESKDLDSRCTNGGSNEVSSDLDGNSDECRICG---MDGTLLCCD 427


>At5g13290.2 68418.m01527 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 331

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/66 (24%), Positives = 33/66 (50%)
 Frame = +3

Query: 246 VTSTLLVLLFMIGVHTKVVAPSIITARTRSILNDFNMSCDDTGKLILKPRPANSSLF*IL 425
           +TS ++V+  + G+ T +V+  ++    RSI+     +    G ++  P+    SL   L
Sbjct: 58  ITSKVIVISIVSGILTGLVSALVLAFLVRSIVKFMKQTPILKGPVVFSPKITPKSLHAAL 117

Query: 426 SNFVHI 443
           SN + +
Sbjct: 118 SNGIQL 123


>At5g13290.1 68418.m01526 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 376

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +3

Query: 246 VTSTLLVLLFMIGVHTKVVAPSIITARTRSILNDFNMSCDDTGKLILKPRPANSSLF*IL 425
           +TS ++V+  + G+ T +V+  ++    RSI+     +    G ++  P+    SL   L
Sbjct: 58  ITSKVIVISIVSGILTGLVSALVLAFLVRSIVKFMKQTPILKGPVVFSPKITPKSLHAAL 117

Query: 426 SN 431
           SN
Sbjct: 118 SN 119


>At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD finger
           protein-related contains Pfam profiles PF03107: DC1
           domain, weak hit to PF00628: PHD-finger
          Length = 513

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
 Frame = -2

Query: 299 YLCMYSNHE*QNQ*CRGHSKKGMIPQRLCERDYRCQRIHQPMVCCYCCTN*H-NC 138
           Y+  Y + E     CRG    G     LCE             C YCCT  H NC
Sbjct: 396 YMVRYKHDEHYLTFCRGDEAGGSDWCELCEGKLAIGGKEGFYKCTYCCTTLHINC 450


>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
           calmodulin-binding protein GI:6760428 from [Arabidopsis
           thaliana]
          Length = 1022

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -3

Query: 163 IAVQTDTIVSRILHLIVAGWRHAITSVK 80
           I V + T  S ILH+I+ G RH++++++
Sbjct: 549 IGVPSSTQRSDILHIILRGMRHSLSNIQ 576


>At5g37220.1 68418.m04470 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 214

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/51 (25%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = -3

Query: 301 TTFVCTPIMNSKTNNVEVTAKKG*FHKDCVSET-TGVRGSINQWYAAIAVQ 152
           T  +C   +NS++++  + +    FH+ C+ E+ + VRG+I +   A+ ++
Sbjct: 159 TCSICMENLNSESSSENIISCLHLFHQSCIFESESSVRGNIMKPCEALKIR 209


>At5g26340.1 68418.m03148 hexose transporter, putative strong
           similarity to hexose transporter, Lycopersicon
           esculentum, GI:5734440; contains Pfam profile PF00083:
           major facilitator superfamily protein
          Length = 526

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 132 LLTIVSVCTAIAAYHWLMDPL 194
           +L +V +CT +AA+ W   PL
Sbjct: 387 ILVVVMICTYVAAFAWSWGPL 407


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,304,159
Number of Sequences: 28952
Number of extensions: 178873
Number of successful extensions: 528
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)