Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_O20
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        29   0.57 
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ...    28   1.3  
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe...    27   1.8  
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    27   3.1  
SPCC736.10c |mrps8||mitochondrial ribosomal protein subunit S8|S...    26   5.3  
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.1  
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy...    25   7.1  
SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomy...    25   9.3  

>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +1

Query: 223 EETKRDASQRSKQSYQKVVSLEIHGTDAIPTTIHEQ*EKTRRITS 357
           E  ++   Q + +S+ K  ++++H  DA PT + +      RI S
Sbjct: 59  ENAQQGKKQNNSKSFSKKPAIDVHSEDAFPTLLSKTGPSKPRIVS 103


>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 335

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 221 LKRQNEMLAKDPSNPTKKSYPWKY 292
           L R  E+  +  S+PTK+S P+KY
Sbjct: 190 LPRSTEITTQSDSSPTKRSKPFKY 213


>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 94  IEYRDQELKDAAWAEVMKETDLSSVKEVKLKWKKLRDSYRARA 222
           IE  D ++ DA +   +     S V + K K KK+ DSY   A
Sbjct: 214 IEIWDLDIIDAVYPAAVLGAGASQVNKKKKKSKKINDSYHTDA 256


>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 135 GPSRVF*LLVSVLDGRRVPQAGVFANGFNEVLHXRG 28
           GP +   L   +LDG+ VP  G    G+N +    G
Sbjct: 118 GPGKPIHLFEGILDGQVVPPRGSNGFGWNSIFQPNG 153


>SPCC736.10c |mrps8||mitochondrial ribosomal protein subunit
           S8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 286 EIHGTDAIPTTIHEQ*EKTRRI 351
           +IHG DA+PT    Q   TRR+
Sbjct: 49  DIHGPDALPTITTRQNVATRRL 70


>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
 Frame = +2

Query: 230 QNEMLAKDPSNPTK----KSYPWKYMGPMQF 310
           + E+L  DPSNPTK    K    +Y G +Q+
Sbjct: 171 EREVLVTDPSNPTKLVAFKQRKERYPGELQW 201


>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +1

Query: 196 LRDSYRARAEETKRDASQRSKQSYQKVVSLEIHGTDAIPTTIHEQ*EKT 342
           + D  R RAE+ KR     S+Q    + ++    +DAI +   ++ +K+
Sbjct: 136 MEDESRLRAEQHKRRFGVHSQQPSNSIQTIGYSNSDAIKSIAWKEKDKS 184


>SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 223

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +1

Query: 58  VRKYPCLWNTTAIEYRDQELKDAAWAEVMKETDLSSVKEVKLKWKKLRDSYRARAEE 228
           + K   LW +T      +E K A   E + ET+   VKE++ K  +L+  Y A+ +E
Sbjct: 22  INKRSFLWYSTEAA---KEEKPAE--EKVAETENVDVKELQSKLSELKSKYEAKDKE 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,555,001
Number of Sequences: 5004
Number of extensions: 52093
Number of successful extensions: 165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)