Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_O20
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6476| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.35 
SB_24425| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_26383| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_50167| Best HMM Match : PRP1_N (HMM E-Value=0.87)                   30   1.9  
SB_47785| Best HMM Match : Selenoprotein_S (HMM E-Value=0.0012)        30   1.9  
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  
SB_1955| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  
SB_58119| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32)               28   7.5  
SB_34970| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_29731| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_28168| Best HMM Match : Myb_DNA-binding (HMM E-Value=3)             27   9.9  
SB_26753| Best HMM Match : BTK (HMM E-Value=3.9)                       27   9.9  
SB_341| Best HMM Match : Shugoshin_C (HMM E-Value=0.073)               27   9.9  
SB_59115| Best HMM Match : Spectrin (HMM E-Value=0)                    27   9.9  
SB_58307| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_35432| Best HMM Match : HALZ (HMM E-Value=1.3)                      27   9.9  
SB_28970| Best HMM Match : DUF919 (HMM E-Value=3.7)                    27   9.9  
SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_17228| Best HMM Match : DivIVA (HMM E-Value=2.5)                    27   9.9  
SB_236| Best HMM Match : QPP (HMM E-Value=1.8)                         27   9.9  

>SB_6476| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 293

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = +1

Query: 37  MEHFIETVRKYPCLWNTTAIEYRDQELKDAAWAEVMKETDLSSVKEVKLKWKKLR 201
           +E  I+   + PCLW+ +  EY  +  +  A  E+ ++  + ++ +VK K K LR
Sbjct: 37  VEQLIDLFEERPCLWDVSNKEYYQKGNRQRAEEEIAEQMGI-TLNDVKSKIKSLR 90


>SB_24425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 947

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +3

Query: 393 TNITGKPIVLRSRSPKXNHHLKE 461
           TN+TGKP+ L + + K NH+L++
Sbjct: 182 TNLTGKPLFLLATAVKTNHNLRD 204


>SB_26383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1142

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
 Frame = +1

Query: 82   NTTAIEYRDQELKDAAWAEVMKETDLSSVKEV-KLKWKKLRDSYRARAEETKRDASQRSK 258
            NT+ +  +DQE +   + E +KE    S KEV KL   + +D+++ + EE    + Q+++
Sbjct: 987  NTSRMMRQDQEKELKKFKENLKEEQKRSKKEVDKLPRNQRKDAWKKKKEELDL-SHQQAE 1045

Query: 259  QSYQKVVSLE 288
              +Q +  +E
Sbjct: 1046 HEFQAMQQVE 1055


>SB_50167| Best HMM Match : PRP1_N (HMM E-Value=0.87)
          Length = 267

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/58 (29%), Positives = 32/58 (55%)
 Frame = +1

Query: 94  IEYRDQELKDAAWAEVMKETDLSSVKEVKLKWKKLRDSYRARAEETKRDASQRSKQSY 267
           I+  ++ L+D  + EV KE     VKE+K K KK+ D   +   ++  + +  S+Q++
Sbjct: 115 IQGSERSLEDIDYDEVKKEFGEEMVKELKSKHKKIEDLGCSSGVDSALNLNGDSQQNF 172


>SB_47785| Best HMM Match : Selenoprotein_S (HMM E-Value=0.0012)
          Length = 199

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
 Frame = +1

Query: 103 RDQELKDAAWAEVMKETDLSSVKEV-KLKWKKLRDSYRARAEETKRDASQRSKQ 261
           R+QE K+ A  +  KE  L S  E+ +L+W++++D+  A+  E K+ A +  ++
Sbjct: 67  REQE-KEIANFDPEKEAALQSKIEMSRLRWQEIQDAKAAKFAEEKKKAEEEKRK 119


>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1755

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = +1

Query: 121  DAAWAEVMKETDLSSVKEVKLKWK-----KLRDSYRARAEETKRDASQRSKQSYQKVVSL 285
            +A  AE +K     ++KE +L W+     KLR    A   ETK   ++  K+ +Q+ + L
Sbjct: 1498 EAEAAEEVKSRVREALKEEQLTWEEEHREKLRQEVDAAVAETKASVTKIHKEQFQRDLDL 1557

Query: 286  EI 291
             +
Sbjct: 1558 AL 1559


>SB_1955| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/58 (27%), Positives = 32/58 (55%)
 Frame = +1

Query: 94  IEYRDQELKDAAWAEVMKETDLSSVKEVKLKWKKLRDSYRARAEETKRDASQRSKQSY 267
           I+  ++ L+D  + EV K+     VKE+K K KK+ D   +   ++  + +  S+Q++
Sbjct: 154 IQCSERSLEDIDYDEVKKKFGEEMVKELKSKHKKIEDLGCSSGVDSALNLNGDSQQNF 211


>SB_58119| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 516 SKTKKCSRKLITWSGKGRPRLRR 584
           SK   C RK +TWS K  P  RR
Sbjct: 123 SKKNPCQRKKVTWSRKKNPFKRR 145


>SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32)
          Length = 398

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 60  SQIPLPVEHDGHRVQRPRVKR 122
           S IPLPV  +G + Q+P VKR
Sbjct: 46  SLIPLPVRVNGIKTQKPHVKR 66


>SB_34970| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 866

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = +1

Query: 52  ETVRKYPCLWNTTAIEYRDQELKDAAWAEVMKETDL-----SSVKEVKLKWKKLRDSYRA 216
           E+V +   + N+        +LK++ W E+  + +       S+ EVK KWK L    + 
Sbjct: 714 ESVAEKKEILNSKLTNSVTNKLKNSVWEEIKDKVNAVGVAPRSLVEVKDKWKNLLSQAKR 773

Query: 217 RAEETKRD 240
              E KR+
Sbjct: 774 ENSEFKRE 781


>SB_29731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 513 KSKTKKCSRKLITWSGKGRPRLRRCLTLWTYFSTACASLLKDXH 644
           K+ TK C  KL +W    RPR++    L +   T  AS+L+  H
Sbjct: 79  KNYTKTCRGKLYSWLPMKRPRVKTG-NLASGIVTKPASILQSSH 121


>SB_28168| Best HMM Match : Myb_DNA-binding (HMM E-Value=3)
          Length = 121

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = +1

Query: 52  ETVRKYPCLWNTTAIEYRDQELKDAAWAEVMKETDL-----SSVKEVKLKWKKLRDSYRA 216
           E+V +   + N+        +LK++ W E+  + +       S+ EVK KWK L    + 
Sbjct: 22  ESVAEKKEILNSKLTNSVTNKLKNSVWEEIKDKVNAVGVAPRSLVEVKDKWKNLLSQAKR 81

Query: 217 RAEETKRD 240
              E KR+
Sbjct: 82  ENSEFKRE 89


>SB_26753| Best HMM Match : BTK (HMM E-Value=3.9)
          Length = 194

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +3

Query: 390 VTNITGKPIVLRSRSPKXNH-HLKERTASS*P*STGNLTIYVKSKTKKCSRKLITWSGKG 566
           + ++  K   +++ +P     +L  +  S+ P  T N   ++ SKT+ C R L   + + 
Sbjct: 46  LVHLASKTCQVKANTPAFEQVNLSRKNLSTFPVYTSNF--FLSSKTRPCRRPLSLCASRV 103

Query: 567 RPRLRRCLTLWTYFSTAC 620
           +PR    +T  ++   AC
Sbjct: 104 QPRHDITITCASHTIIAC 121


>SB_341| Best HMM Match : Shugoshin_C (HMM E-Value=0.073)
          Length = 222

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 54  NRSQIPLPVEHDGHRVQRPRVKRRGLG 134
           NR+   L +  DG ++++PRV ++G G
Sbjct: 3   NRTSSLLRITKDGGQIEKPRVSQKGAG 29


>SB_59115| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 1457

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
 Frame = +1

Query: 97  EYRDQELKDAAW-------AEVMKETDLSSVKEVKLKWKKL 198
           EYRD+E + AAW        E +K  DLSS+ +V+   ++L
Sbjct: 698 EYRDEEKRLAAWLMEKEREIEDLKTVDLSSLDDVRTNLEQL 738


>SB_58307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 276

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 54  NRSQIPLPVEHDGHRVQRPRVKRRGLG 134
           NR+   L +  DG ++++PRV ++G G
Sbjct: 3   NRTSSLLRITKDGGQIEKPRVSQKGAG 29


>SB_35432| Best HMM Match : HALZ (HMM E-Value=1.3)
          Length = 206

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = +1

Query: 52  ETVRKYPCLWNTTAIEYRDQELKDAAWAEVMKETDL-----SSVKEVKLKWKKLRDSYRA 216
           E+V +   + N+        +LK++ W E+  + +       S+ EVK KWK L    + 
Sbjct: 22  ESVAEKKEILNSKLTNSVTNKLKNSVWEEIKDKVNAVGVAPRSLVEVKDKWKNLLSQAKR 81

Query: 217 RAEETKRD 240
              E KR+
Sbjct: 82  ENSEFKRE 89


>SB_28970| Best HMM Match : DUF919 (HMM E-Value=3.7)
          Length = 173

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 513 KSKTKKCSRKLITWSGKGRPRLRRCLTLWTYFSTACASLLKDXH 644
           K+ TK C  KL +W    RPR++    L +   T  AS+L+  H
Sbjct: 72  KNYTKTCRGKLYSWLPMKRPRVKTG-NLASGIVTKPASILQSSH 114


>SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1511

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 82   NTTAIEYRDQELKDAAWAEVMKETDLSSVKEVKLKWKKLRDSYRARAEE 228
            NT  I  + + +  +A  E  KE  + +V +V  +WK+  +SY+   EE
Sbjct: 1225 NTFRITSKQRVVDFSAETEDEKEQWIKAVSDVIAEWKRKMESYKRVNEE 1273


>SB_17228| Best HMM Match : DivIVA (HMM E-Value=2.5)
          Length = 160

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
 Frame = +1

Query: 52  ETVRKYPCLWNTTAIEYRDQELKDAAWAEVMKETDL-----SSVKEVKLKWKKLRDSYRA 216
           E+V +   + N+        +LK++ W E+  + +       S+ EVK KWK L    + 
Sbjct: 22  ESVAEKKEILNSKLTNAVTNKLKNSVWEEIKDKVNAVGVAPRSLVEVKDKWKNLFSQAKR 81

Query: 217 RAEETKR 237
            + E KR
Sbjct: 82  ESSEFKR 88


>SB_236| Best HMM Match : QPP (HMM E-Value=1.8)
          Length = 217

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
 Frame = +1

Query: 103 RDQELKDAAWAEVMKETDLSSVKEVKLKWKKLRDSYRARAEE----TKRDASQRSKQSYQ 270
           R +   D AW E  +E D    K  + + ++  D      EE    T R  +++  Q+ Q
Sbjct: 58  RRRHRTDKAWTE--QEEDTEQTKRARTRRRQRTDKAWIEQEEDREQTNRGQNKKKTQNRQ 115

Query: 271 KVVSLEIHGTDAIPTTIHEQ*EKTRR 348
            V       TD   T   E  E+T+R
Sbjct: 116 SVDRTRRQRTDKSWTEQEEDTEQTKR 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,500,736
Number of Sequences: 59808
Number of extensions: 400218
Number of successful extensions: 1401
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1400
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)