Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_O20
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    23   2.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.8  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   5.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.8  

>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 208 YRARAEETKRDASQRSKQSYQKVVS 282
           YR  ++E  RD  +R +    K+VS
Sbjct: 59  YRETSKERSRDRRERERSKEPKIVS 83


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 343 RRITSIFSTGSQARKWSP 396
           R ++S+FS G     WSP
Sbjct: 186 RALSSLFSKGCLVGTWSP 203


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 343 RRITSIFSTGSQARKWSP 396
           R ++S+FS G     WSP
Sbjct: 186 RALSSLFSKGCLVGTWSP 203


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 315 CRNCIGPMYFQGYDFLVGLLGSLASISFCLFS 220
           CRNCI P  F    F +G   S  +I+ C+++
Sbjct: 35  CRNCIHPTVFSVL-FWLGYCNS--AINPCIYA 63


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 343 RRITSIFSTGSQARKWSP 396
           R ++S+FS G     WSP
Sbjct: 186 RALSSLFSKGCLVGTWSP 203


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 315 CRNCIGPMYFQGYDFLVGLLGSLASISFCLFS 220
           CRNCI P  F    F +G   S  +I+ C+++
Sbjct: 483 CRNCIHPTVFSVL-FWLGYCNS--AINPCIYA 511


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,225
Number of Sequences: 438
Number of extensions: 4059
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)