Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_O17
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   151   6e-38
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   148   7e-37
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    25   8.9  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   8.9  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    25   8.9  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  151 bits (367), Expect = 6e-38
 Identities = 73/108 (67%), Positives = 86/108 (79%)
 Frame = +2

Query: 299 LLVNGNKIAVFSERDPKAIPWGKAGAEYVVXSTGVFTTTDKASAHLEGGAKKVIISAPSA 478
           L+++G+ I V +ERDP  I W  +GAEYV+ STGVFTT + ASAHL+GGAK+VIISAPS 
Sbjct: 67  LVIDGHSIDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKRVIISAPSK 126

Query: 479 DAPMFVVGVNLQXYDPSLKVISNASCTTNCLAPLAKVFMITLKFFXGL 622
           DAPMFVVGVNL+ ++PS KVISNASCTTNCLAPLAKV   T     GL
Sbjct: 127 DAPMFVVGVNLEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGL 174



 Score = 70.1 bits (164), Expect = 2e-13
 Identities = 30/39 (76%), Positives = 34/39 (87%)
 Frame = +1

Query: 184 QVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQDGFL 300
           QVVA+NDPFI LDYM Y+FKYDSTHGRF+GSVE + G L
Sbjct: 29  QVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSVETKGGKL 67



 Score = 35.1 bits (77), Expect = 0.008
 Identities = 14/16 (87%), Positives = 16/16 (100%)
 Frame = +3

Query: 114 KIGINGFGRIGRLVLR 161
           K+GINGFGRIGR+VLR
Sbjct: 5   KVGINGFGRIGRIVLR 20


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  148 bits (358), Expect = 7e-37
 Identities = 71/108 (65%), Positives = 85/108 (78%)
 Frame = +2

Query: 299 LLVNGNKIAVFSERDPKAIPWGKAGAEYVVXSTGVFTTTDKASAHLEGGAKKVIISAPSA 478
           L+++GN I V +ERDP  I W  +GA+YV+ STGVFTT + ASAHL+GGAK+VIISAPS 
Sbjct: 67  LVIDGNAIDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIISAPSK 126

Query: 479 DAPMFVVGVNLQXYDPSLKVISNASCTTNCLAPLAKVFMITLKFFXGL 622
           DAPM+VVGVN + ++PS KVISNASCTTNCLAPLAKV   T     GL
Sbjct: 127 DAPMYVVGVNEEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGL 174



 Score = 74.5 bits (175), Expect = 1e-14
 Identities = 33/46 (71%), Positives = 38/46 (82%)
 Frame = +1

Query: 163 ASIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQDGFL 300
           A + K  QVVAINDPFI L+YM Y+FKYDSTHGRF GSVE++DG L
Sbjct: 22  ALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDGSVEIKDGKL 67



 Score = 35.1 bits (77), Expect = 0.008
 Identities = 14/16 (87%), Positives = 16/16 (100%)
 Frame = +3

Query: 114 KIGINGFGRIGRLVLR 161
           K+GINGFGRIGR+VLR
Sbjct: 5   KVGINGFGRIGRIVLR 20


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 453 KLLYQLPVLMPPCLLWVLTYXLMTP 527
           K  + +P+    C LWV  Y   TP
Sbjct: 490 KFFFIIPIAKNVCYLWVFLYCPFTP 514


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 213 DERVIYSDHLSSLFNRSSGAPNGQ 142
           DERV+  + + SLF RSSG  + Q
Sbjct: 544 DERVVLLNKIFSLFPRSSGKEHYQ 567


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 321 LPFSQKGTLRPFHGEKLGLNMLXSLLVSLPLQIKHLLTWREVLKKLLY 464
           L  + +GT    HG       L S + +L L I+  L+WR++    +Y
Sbjct: 355 LTTNPEGTCTRSHGGTSAAAPLASAVYALALSIRPDLSWRDIQHITVY 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,556,875
Number of Sequences: 5004
Number of extensions: 52247
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)