Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_O17
         (624 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)             154   5e-38
SB_10790| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_35947| Best HMM Match : IQ (HMM E-Value=0.00061)                    28   7.1  
SB_33427| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_47196| Best HMM Match : Extensin_2 (HMM E-Value=0.02)               27   9.4  
SB_40261| Best HMM Match : Glyco_transf_10 (HMM E-Value=5.5)           27   9.4  

>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score =  154 bits (374), Expect = 5e-38
 Identities = 69/97 (71%), Positives = 83/97 (85%)
 Frame = +2

Query: 299  LLVNGNKIAVFSERDPKAIPWGKAGAEYVVXSTGVFTTTDKASAHLEGGAKKVIISAPSA 478
            L++NG  ++VF+ +DP  IPWG+ GA+YVV STGVFTT +KA  HL+GGAKKVIISAPSA
Sbjct: 840  LVINGKPVSVFACKDPTQIPWGETGADYVVESTGVFTTLEKAGFHLKGGAKKVIISAPSA 899

Query: 479  DAPMFVVGVNLQXYDPSLKVISNASCTTNCLAPLAKV 589
            DAPMFV+GVN + YDPS+ V+SNASCTTNCLAPL KV
Sbjct: 900  DAPMFVMGVNHEKYDPSMTVVSNASCTTNCLAPLVKV 936



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 19/24 (79%), Positives = 22/24 (91%)
 Frame = +1

Query: 229 VYLFKYDSTHGRFKGSVEVQDGFL 300
           VY+FKYDSTHGRFKG+VE +DG L
Sbjct: 817 VYMFKYDSTHGRFKGTVEAKDGKL 840


>SB_10790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 368

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +1

Query: 70  SVIQQIFYNLPITCQKLESMDLAALAVWCSAA 165
           S+ + +FY   I+C+KL S+D+ AL  + S++
Sbjct: 24  SLPKTVFYCKEISCRKLRSIDMTALRDYISSS 55


>SB_35947| Best HMM Match : IQ (HMM E-Value=0.00061)
          Length = 1060

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 416 DKASAHLEGGAKKVIISAP--SADAPMFVVGVNLQXYDPSLKVISNASCTTNCLAPLAKV 589
           D+ S H    A  V    P  +A+  +FV    +  YDP++ + ++ S   + LAP + V
Sbjct: 20  DRISKHGVQSAPAVFGQRPVSNANGTLFVRRFQMFRYDPNIAITTHGSSKKSGLAPASSV 79

Query: 590 FMIT 601
              T
Sbjct: 80  TATT 83


>SB_33427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 786

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 557 TTNCLAPLAKVFMITLKFFXG 619
           TT C +P+ K+ +  LKFF G
Sbjct: 371 TTACFSPVPKILVAALKFFLG 391


>SB_47196| Best HMM Match : Extensin_2 (HMM E-Value=0.02)
          Length = 376

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 335 ERDPKAIPWGKAGAEYVVXSTGVFTTTDKASA 430
           E+DP   PW     ++++   G  TT DKA A
Sbjct: 221 EQDPPPPPWTAPEPDFLLTLPGPDTTVDKARA 252


>SB_40261| Best HMM Match : Glyco_transf_10 (HMM E-Value=5.5)
          Length = 480

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 91  YNLPITCQKLESMDLAALAVWCSAASIEKGAQVVAINDPFIGLDY 225
           YN     Q LESM    L+ +C  +  +K A++  I D  + + Y
Sbjct: 430 YNQTRPKQSLESMRAPELSDYCVPSRTQKNAELAYIGDGALAIGY 474


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,027,502
Number of Sequences: 59808
Number of extensions: 375679
Number of successful extensions: 967
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)