Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_O16
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    29   0.75 
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    27   2.3  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    27   3.0  
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    26   5.3  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   5.3  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    26   5.3  
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    25   7.0  
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    25   7.0  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    25   7.0  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   7.0  
SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|...    25   9.2  

>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 17/69 (24%), Positives = 37/69 (53%)
 Frame = +3

Query: 219 GLVDLNVLKTEIEEAKPNGALDEVFKKYCDKSAQLKGCISSVLQGVRXCVGNEYANHIND 398
           GL  +N+L + ++ +K    LD+V     D + +L  C++S+L+  +   G+E    +  
Sbjct: 85  GLKIVNILSS-LDSSKWEAYLDQVVN--ADSADELTVCLTSILKKAKIIPGSEARVFVGY 141

Query: 399 AQNSTNQLI 425
              ST++++
Sbjct: 142 DSRSTSEIL 150


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 265 LASSISVFRTFKSTSPLRQFPKVRNAASTCRDFVFSI 155
           L  S  VFR F+S++P   FP V  A    R F  S+
Sbjct: 9   LQLSWQVFRRFQSSNPQLSFPCVDQAQERSRQFEQSL 45


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -1

Query: 585 QQGSSYWRIPQWGSSVSNLKSMX*DSQSFAGSTQGRLP 472
           Q+ SS  R+  + S++S+LKS    SQ+  GST   +P
Sbjct: 376 QRLSSLNRVASFESNISSLKSALYASQNSDGSTSNPVP 413


>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 24  EVEQVSLLTTDVEDCLDNDF 83
           E+E  SLL TD+ D L N F
Sbjct: 336 EIEDASLLKTDISDELKNTF 355


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 372 NEYANHINDAQNSTNQLIDFVCYKDGD 452
           +EY N + D + + N++++   YKD D
Sbjct: 569 DEYRNKLKDKEETYNEVMNAFQYKDND 595


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 409 LFWASLMWFAYSLPTQXRTPCSTELIQP 326
           L WAS+  FAY LP     P +T    P
Sbjct: 128 LQWASVPLFAYDLPPDPSNPNATSSSPP 155


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +3

Query: 315 AQLKGCISSVLQGVRXCVGNEYANHINDAQNSTNQLIDFVCYKDGDRIALFIAEG 479
           A++  C  +  + VR   G+   NH+ D    T  +  F+ Y D   I  F  +G
Sbjct: 190 AEIVFCAIASNEQVRG-YGSHLMNHLKDYVRGTTTIQHFLTYADNYAIGYFKKQG 243


>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -3

Query: 589 FSTRLKLLADSTVGKLCFKFKKHVLRFSVFCWKHSGPPSAMNKAIRSP 446
           F++RL+ L D        K     +  S+  W+   PPS ++ + +SP
Sbjct: 287 FNSRLQKLVDDPNSLKAIKTSTQNVGRSIVYWEKEFPPSNIDSSPQSP 334


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +1

Query: 40  PCLQLMWKTVLITIFAAGVLA 102
           PC++L+  + L+T++ AG+L+
Sbjct: 301 PCIRLLSISCLVTLYKAGILS 321


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/62 (22%), Positives = 28/62 (45%)
 Frame = +3

Query: 291 FKKYCDKSAQLKGCISSVLQGVRXCVGNEYANHINDAQNSTNQLIDFVCYKDGDRIALFI 470
           FK Y D +  L    +  +     C+ +EY   +  + +S++Q    + Y++  R A  +
Sbjct: 13  FKFYIDTALLLN---AEFISSFTNCINSEYNGKVKISYSSSSQQFKVIVYEEHKREAFSL 69

Query: 471 AE 476
            E
Sbjct: 70  FE 71


>SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 106

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +3

Query: 432 VCYKDGDRIALFIAEGGPECFQQKTENLXTCFLNLKQSFPTVESANN 572
           VCY+  D   + IA  GP+  + + +        +  SF    ++NN
Sbjct: 11  VCYQPEDTTFIIIASNGPDVMRWRKDKTVP-LTEIVDSFQVFTTSNN 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,574,394
Number of Sequences: 5004
Number of extensions: 49460
Number of successful extensions: 123
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)