Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_O16
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20)                      28   5.6  
SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_46239| Best HMM Match : Phage_integrase (HMM E-Value=0.24)          27   9.7  
SB_21904| Best HMM Match : Vinculin (HMM E-Value=0)                    27   9.7  

>SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20)
          Length = 1243

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 280 SAPFGLASSISVFRTFKSTSPLRQFP 203
           S PFG+ S+ S+ + F S + L++FP
Sbjct: 458 SLPFGIQSASSLVKLFLSNNKLKEFP 483


>SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 204 GNCLKGLVDLNVLKTEIEE 260
           GNCLKG+V++NV    IE+
Sbjct: 277 GNCLKGIVNVNVSPNIIEQ 295


>SB_46239| Best HMM Match : Phage_integrase (HMM E-Value=0.24)
          Length = 364

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 414 WYCFGHH*CGSHIRCLHKXAR 352
           W+C+G+   G   RC+H+  R
Sbjct: 302 WFCWGYFSYGESSRCIHRGVR 322


>SB_21904| Best HMM Match : Vinculin (HMM E-Value=0)
          Length = 999

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 255 EEAKPNGALDEVFKKYCDKSAQLKG 329
           ++A P G LD+  +K C K++ L+G
Sbjct: 364 KKAVPGGPLDKAIEKMCSKTSGLRG 388


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,038,492
Number of Sequences: 59808
Number of extensions: 395114
Number of successful extensions: 1037
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)