Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_O16
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase, put...    29   2.0  
At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger) fa...    29   3.4  
At5g28550.1 68418.m03483 hypothetical protein                          28   4.5  
At1g76080.1 68414.m08835 thioredoxin family protein low similari...    27   7.9  
At1g24610.1 68414.m03096 SET domain-containing protein low simil...    27   7.9  

>At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase,
           putative / 3-PGDH, putative similar to SP:O04130 from
           [Arabidopsis thaliana]
          Length = 588

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 504 TENLXTCFLNLKQSFPTVESANNLSLVEKCAKVDXMTSCIVKS 632
           TE L    ++L + +  V+ + +LSL E C K+    + IV+S
Sbjct: 52  TEKLGQAGIDLLKKYANVDCSYDLSLEELCTKISLCDALIVRS 94


>At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 396

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 279 LDEVFKKYCDKSAQLKGCISSVLQGVRXCVGNEYANHINDAQNS 410
           LD  F+    +  +  G I  +LQG+R  + +EY +  N+  NS
Sbjct: 136 LDREFESILRRRRRSSGNILQLLQGIRAGIASEYESSDNNWDNS 179


>At5g28550.1 68418.m03483 hypothetical protein
          Length = 286

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 159 LKTKSLQVEAALRTFGNCLKGLVDLNVLKTEI-EEAKPNGALDEVFKKYCDKSA 317
           L+  S+  +  +RT   C++ L  + V K+++ E+  P  A+ +   + C KSA
Sbjct: 152 LEKASMVFKLCIRTVWTCVRLLCQIYVNKSDLSEDCLPKEAIIDFVSEACSKSA 205


>At1g76080.1 68414.m08835 thioredoxin family protein low similarity
           to thioredoxin (TRX) [Fasciola hepatica] GI:6687568;
           contains Pfam profile PF00085: Thioredoxin
          Length = 302

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 253 ISVFRTFKSTSPLRQFPKVRNAASTCRDFVFSIVLG 146
           ++ F T KS    + +P +   + TC D VF +V+G
Sbjct: 97  VAEFATSKSDQSNKIYPFMVELSRTCNDVVFLLVMG 132


>At1g24610.1 68414.m03096 SET domain-containing protein low
           similarity to SP|Q43088 Ribulose-1,5 bisphosphate
           carboxylase/oxygenase large subunit N-
           methyltransferase, chloroplast precursor (EC 2.1.1.127)
           {Pisum sativum}; contains Pfam profile PF00856: SET
           domain
          Length = 476

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = -3

Query: 286 SSSAPFGLASSISVFRT 236
           S+ APFG+A+ I+VFRT
Sbjct: 392 SAVAPFGIANEIAVFRT 408


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,761,542
Number of Sequences: 28952
Number of extensions: 274172
Number of successful extensions: 768
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)