Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_O13
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    27   2.3  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   9.5  
SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces...    25   9.5  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    25   9.5  

>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 20/65 (30%), Positives = 26/65 (40%)
 Frame = +3

Query: 60  VRFHVIPTKCTYSGYF*KRSTMDYIVGSVAALVSGNVTPNRPRLLKRPLTPTKHQPSPNV 239
           V+F  IPT   Y      +  + +   SVAAL      P++P    R   P  H P P  
Sbjct: 121 VQFKFIPTDPLYFDRASSKPVLQFPYSSVAALTPVPKKPSKPS-KPRKKVPVSH-PLPPT 178

Query: 240 TPKSE 254
            P  E
Sbjct: 179 PPSRE 183


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
 Frame = -3

Query: 334  ILFGDFFTIAXXFCNVGDRNIERSSTNSLL---GVTFGEGW 221
            I F   F +     N G     RS  N+L+    +TFGEGW
Sbjct: 1411 IAFNQIFGLTKLGLNGGPNKNFRSIRNALVLLFTMTFGEGW 1451


>SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 276

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/70 (22%), Positives = 30/70 (42%)
 Frame = +3

Query: 174 PNRPRLLKRPLTPTKHQPSPNVTPKSEFVEDRSIFLSPTLQXXKAMVKKSPKRIFXNPDL 353
           P  P L++        +P      +S+F+ DR+ F +  L    AMV      I     +
Sbjct: 116 PILPALIRHLQVTLNFRPCAVYLLESQFLVDRTKFFAGVLSAMSAMVMMEVPHINLLSKM 175

Query: 354 ELTENSDTTT 383
           +L ++++  T
Sbjct: 176 DLLKDNNNIT 185


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 126 DYIVGSVAALVSGNVTPNRPRLLKRPL 206
           DY    VAA   G+V  N P L K PL
Sbjct: 144 DYFCIGVAAYPEGHVDSNVPELSKDPL 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,366,439
Number of Sequences: 5004
Number of extensions: 45306
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)