Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_O13
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0847 + 11721847-11722294,11723043-11723108,11723276-117233... 30 1.4
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424... 29 2.4
01_01_0778 + 6024154-6024315,6024725-6024802,6024909-6025071,602... 29 4.2
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 28 5.6
02_03_0246 - 16807619-16808145,16808208-16808868 28 7.4
02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75... 27 9.8
01_01_0590 + 4396958-4397155,4397246-4397335,4397445-4397583,439... 27 9.8
>03_02_0847 +
11721847-11722294,11723043-11723108,11723276-11723358,
11723585-11723673,11723783-11723906
Length = 269
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 271 ERSSTNSLLGVTFGEGWCLVGVRGRLSNLGRFGVTLPETKAATLPTM 131
++ +L GV GE CL G+ G G +GV + +A LPT+
Sbjct: 76 DKGCCGALAGVVDGEAACLCGLVG---GYGAYGVRVDAVRALALPTI 119
>04_04_1574 -
34536744-34537136,34541247-34541405,34541497-34542411,
34543642-34543731,34544324-34544390,34544483-34544676,
34544770-34545510,34545596-34545661,34545783-34545908,
34545978-34546073,34546153-34546521,34546602-34546724,
34546802-34546906,34547394-34547531,34547665-34547760,
34548018-34548275
Length = 1311
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/65 (23%), Positives = 32/65 (49%)
Frame = +3
Query: 222 QPSPNVTPKSEFVEDRSIFLSPTLQXXKAMVKKSPKRIFXNPDLELTENSDTTTPSPKAX 401
QPS +V+P + + +++ L+ T +A+ + +P + + ++ N TTT P
Sbjct: 488 QPSSSVSPCNRALGEQTPRLNSTSHLGEAVKQLAPNNLGVHSSMDRPANGSTTTSVPLKR 547
Query: 402 KVKKH 416
+ H
Sbjct: 548 NLVSH 552
>01_01_0778 +
6024154-6024315,6024725-6024802,6024909-6025071,
6025484-6025788,6025897-6025961,6026570-6026763,
6027233-6027441,6028147-6028325,6029345-6029459,
6029520-6029558
Length = 502
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 141 SVAALVSGNVTPNRPRLLKRPLTPTKHQPSPNVTPKS 251
S +A + P+RPRL R QP P V P S
Sbjct: 9 SSSAAAAARAAPHRPRLRSRRSLRPPPQPQPRVLPSS 45
>07_03_0965 -
22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 4/99 (4%)
Frame = +3
Query: 114 RSTMDYIVGSVAALVSGNVTPNRPRLLKRPLTPTKHQPSPNVTPKSEFVEDRSIFLSPTL 293
R + ++ GS ++ SG RP P T P P ++ F+++ I ++ L
Sbjct: 233 RKKLKHLGGSGSSGASGQAPKQRPSPASAPSTAPPQPPPPKISKSPSFIQE-EIEVAEVL 291
Query: 294 QXXKAMVKKSPKRIFXNPDLELTE----NSDTTTPSPKA 398
K + N LE+ + S ++P+P +
Sbjct: 292 FGLTRQFPCPSKPVESNHKLEVRDAPEAKSGNSSPAPSS 330
>02_03_0246 - 16807619-16808145,16808208-16808868
Length = 395
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 134 CRKRCCFGFRQRNTEPS*ITQTTPNA 211
CR CC G R+R PS TTP A
Sbjct: 114 CRPPCCCGRRRRAASPSASPCTTPPA 139
>02_01_0102 -
749122-749799,750123-750371,750753-750851,751380-751889,
752025-753905,754093-754296,754807-754899,755036-755122,
755241-755328,755533-755645,755943-757259,757398-758672,
759166-759273
Length = 2233
Score = 27.5 bits (58), Expect = 9.8
Identities = 23/74 (31%), Positives = 32/74 (43%)
Frame = +3
Query: 159 SGNVTPNRPRLLKRPLTPTKHQPSPNVTPKSEFVEDRSIFLSPTLQXXKAMVKKSPKRIF 338
SG + P R LLK P P +P ED++I S +Q KA SPK
Sbjct: 513 SGGIAPERSSLLKAPCLPKVEVSAP---------EDKTIPASGPMQVMKA----SPKEPL 559
Query: 339 XNPDLELTENSDTT 380
+ + E ++TT
Sbjct: 560 RIGPVSMPEQTNTT 573
>01_01_0590 +
4396958-4397155,4397246-4397335,4397445-4397583,
4398125-4398243,4398492-4398559,4399409-4399457,
4399713-4400732
Length = 560
Score = 27.5 bits (58), Expect = 9.8
Identities = 23/96 (23%), Positives = 41/96 (42%)
Frame = +3
Query: 135 VGSVAALVSGNVTPNRPRLLKRPLTPTKHQPSPNVTPKSEFVEDRSIFLSPTLQXXKAMV 314
+G A LV G+ PN + P+ +K + V ++ +I L+P + A V
Sbjct: 411 MGLSAILVPGSGEPNFDTFVDNPVETSKQRREKEVQSLLNKLQPETIMLNPNM---IATV 467
Query: 315 KKSPKRIFXNPDLELTENSDTTTPSPKAXKVKKHLK 422
+ S K+ E+ E + + K+ + KK K
Sbjct: 468 RPSRKK-EKKTKKEIEEEMEDAVEAAKSIEFKKKTK 502
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,714,542
Number of Sequences: 37544
Number of extensions: 277133
Number of successful extensions: 632
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -