Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_O13
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.62 
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_54194| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_59055| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.55)          28   7.6  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_43856| Best HMM Match : Laminin_I (HMM E-Value=0.057)               28   7.6  
SB_9412| Best HMM Match : Peptidase_M1 (HMM E-Value=3.1e-07)           28   7.6  

>SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1511

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
 Frame = +3

Query: 168 VTPNRPRLLKRPLTPTKHQPSPNVTPKSEFVEDRSIFLSPTLQXXKAMVKKSPKRI-FXN 344
           +TP +P    +P  P+   P P++ PK       +I   PTL+   ++ +   K I   N
Sbjct: 195 LTP-KPSPPSKPFKPSP-PPKPSIAPKPSLAIKPAISPKPTLKPKPSLQEIKQKEIRVTN 252

Query: 345 PDLELTE---NSDTTT----PSPKAXKVKKHLKNE 428
            D E  +   + +TTT    P P+  K KK +KNE
Sbjct: 253 SDKESNQTVLDPETTTEKPCPPPRNRK-KKIIKNE 286


>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1569

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 22/97 (22%), Positives = 39/97 (40%)
 Frame = +3

Query: 138  GSVAALVSGNVTPNRPRLLKRPLTPTKHQPSPNVTPKSEFVEDRSIFLSPTLQXXKAMVK 317
            GS AA+     TP   +  +  L P +  P+P  TP++  +   S+ +SPTL+  +    
Sbjct: 1092 GSAAAIE----TPKPTKYQRTALEPIQEVPTPMTTPRNTRLRKDSV-MSPTLEAIQEQAP 1146

Query: 318  KSPKRIFXNPDLELTENSDTTTPSPKAXKVKKHLKNE 428
                 +     L   +       +P +   +K  K E
Sbjct: 1147 AMENVVEEVEKLPAKKTRGAKRKAPASGNAEKKAKAE 1183


>SB_54194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 318 KSPKRIF-XNPDLELTENSDTTTPSPKAXKVKKHLKNE 428
           + PK  F  +PD+E +E++  T P P A K K  + ++
Sbjct: 78  REPKIAFVSDPDVEASEDAQLTPPVPSASKRKLQVSDD 115


>SB_59055| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.55)
          Length = 330

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 174 PNRPRLLKRPLTPTKHQPSPNVTPKSEFVEDRSI 275
           P  PR   RP +P K  P P  +PK E  + RS+
Sbjct: 5   PTSPRKESRPPSPRKTSPRPQ-SPKKEPKQTRSV 37


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +3

Query: 174 PNRPRLLKRPLTPTK-HQPSPNVTPKSEFVEDRSIFLSPTLQXXKAMVKKSPKRIFXNPD 350
           P RPR    P TP++   P+  +TP S   E+  +   P     +   K SP     +P 
Sbjct: 113 PRRPRNADTPFTPSRCIPPASPLTPDS---EEGFVITEPCTTKNRGRSKPSPPVRSSHPV 169

Query: 351 LELTENSDTTTPSP 392
            +   N+ +   SP
Sbjct: 170 KKTRVNAQSKLKSP 183


>SB_43856| Best HMM Match : Laminin_I (HMM E-Value=0.057)
          Length = 976

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 174 PNRPRLLKRPLTPTKHQPSPNVTPKSEFVEDRSI 275
           P  PR   RP +P K  P P  +PK E  + RS+
Sbjct: 443 PTSPRKESRPPSPRKTSPRPQ-SPKKEPKQTRSV 475


>SB_9412| Best HMM Match : Peptidase_M1 (HMM E-Value=3.1e-07)
          Length = 1844

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 159 SGNVTPNRPRLLKRPLTPTKHQPSPNVTPKSEFVEDRS 272
           S +V  NRP  + R  TPTK +   N+  KSE +  ++
Sbjct: 524 SSDVANNRPEYISRSSTPTKSE--TNIGKKSEKISTKT 559


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,536,139
Number of Sequences: 59808
Number of extensions: 335674
Number of successful extensions: 1450
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1449
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)