Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_O13
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20830.1 68416.m02634 protein kinase family protein contains ...    31   0.66 
At3g26700.1 68416.m03339 protein kinase family protein contains ...    31   0.88 
At3g03140.1 68416.m00310 expressed protein                             29   2.0  
At2g02090.1 68415.m00145 SNF2 domain-containing protein / helica...    29   2.7  
At5g52430.1 68418.m06506 hydroxyproline-rich glycoprotein family...    27   8.2  
At4g20050.1 68417.m02934 expressed protein C65DMY30S                   27   8.2  

>At3g20830.1 68416.m02634 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 408

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 186 RLLKRPLTPTKHQPSPNVTPKSEFVEDRSIFLSPTLQXXKAMVKKS 323
           R LK+PL P  +QP P +    +     S  +SPT +  K  +KK+
Sbjct: 175 RSLKKPLRPHFYQPDPELIIDRKKSRSFSRLISPTAEKNKTGLKKT 220


>At3g26700.1 68416.m03339 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 380

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +3

Query: 234 NVTPKSEFVEDRSIFLSPTLQXXKAMVKKSPKRIFXNPDLELTENSDTTTPSPKA 398
           +V   S  V D+ IFLSP +Q  K   +KS    F    LEL    + + PSP +
Sbjct: 232 DVGTSSHIVADQ-IFLSPEVQEFKRFSEKSDVYAFGVFLLELVSGREASEPSPSS 285


>At3g03140.1 68416.m00310 expressed protein
          Length = 769

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = +3

Query: 231 PNVTPKSEFVE---DRSIFLSPTLQXXKAMVKKSPKRIFXNPDLELTENSDTTTPSPKAX 401
           P + P S  VE   D +   S   Q  K +VKK     F N D  +  NS    P P A 
Sbjct: 614 PRLQPFSSSVEADDDATYDYSLADQGRKPLVKKLGLGHFSNDDNSVRRNSSLRIPRPPAE 673

Query: 402 KVKKHLKNE 428
           + ++H + +
Sbjct: 674 RKQQHQQQQ 682


>At2g02090.1 68415.m00145 SNF2 domain-containing protein / helicase
           domain-containing protein similar to transcriptional
           activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain
          Length = 763

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 177 NRPRLLKRPLTPTKHQPSPNVTPKSE 254
           N  R+LKRP TP K + + N TP  E
Sbjct: 19  NASRVLKRPRTPKKTRAATNPTPSIE 44


>At5g52430.1 68418.m06506 hydroxyproline-rich glycoprotein family
           protein Common family member At4g25620 [Arabidopsis
           thaliana]
          Length = 438

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 135 VGSVAALVSGNVTPNRPRLLKRPLTP 212
           VG  + L SG +TPN P ++   LTP
Sbjct: 279 VGHGSGLASGALTPNGPEIVSGNLTP 304


>At4g20050.1 68417.m02934 expressed protein C65DMY30S
          Length = 481

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 20/65 (30%), Positives = 27/65 (41%)
 Frame = +3

Query: 117 STMDYIVGSVAALVSGNVTPNRPRLLKRPLTPTKHQPSPNVTPKSEFVEDRSIFLSPTLQ 296
           S  D  +  + AL +  V  N P L+  P TP +  P P V     +  D +  L  T  
Sbjct: 35  SPHDRALAEMQALKASLVRRNLPALVSPPPTPPQAVPGPRVYQVISYGADPTGKLDSTDA 94

Query: 297 XXKAM 311
             KAM
Sbjct: 95  ILKAM 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,173,233
Number of Sequences: 28952
Number of extensions: 233355
Number of successful extensions: 556
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)