Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_O12
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    31   0.19 
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    29   0.44 
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    27   3.1  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    27   3.1  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    25   9.5  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
 Frame = -1

Query: 347 SSVGLNGSGSRSILGPDGSCKLTTFITLIG*ADPELVALSKSLLKTETGQLSTRTLSSQK 168
           SS  +  S S S L        +TF +L         ++S +   T +    T T SS  
Sbjct: 151 SSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTST-SSSY 209

Query: 167 LAQNSVYTEHQTHA*AA---VIPPNVSCYGTP*TSSVSEGTNSQASVSNGSSTXDSN 6
           L+ +SV +   + + ++   +   ++S    P TSS S  T+S  S S+ SST  S+
Sbjct: 210 LSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSS 266


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -1

Query: 350 NSSVGLNGSGSRSILGPDGSCKLTTFITLIG*ADPE 243
           N +VGL+ S   +ILGP+G+ K T    LIG   P+
Sbjct: 711 NVTVGLSLSSRVAILGPNGAGKSTLIKVLIGEVIPQ 746


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 29/106 (27%), Positives = 42/106 (39%)
 Frame = -1

Query: 320 SRSILGPDGSCKLTTFITLIG*ADPELVALSKSLLKTETGQLSTRTLSSQKLAQNSVYTE 141
           S  IL    S    +   L     P  VA S +    +T   S    S    A +SV T 
Sbjct: 162 SSDILSSLASLSSASTDNLAASVTPTTVAASVAS-SVDTDSASATISSVVDSATSSVSTV 220

Query: 140 HQTHA*AAVIPPNVSCYGTP*TSSVSEGTNSQASVSNGSSTXDSND 3
             +   +A  PP+ +   TP ++S +  T S  S S  S +  S+D
Sbjct: 221 IPSSIISAA-PPDSASESTPASTSYASSTTSATSTSTTSGSSGSSD 265


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 122  LTRVSGALCT-LNSVLTFVMIMYVY*VVQFLFSTRILTTQPVPDQLXR 262
            LT +S    T  +SVLT V +++V  ++  L +  + T  P P+ L R
Sbjct: 953  LTIISAVASTDQSSVLTAVQLLWVNLIMDTLAALALATDPPTPEVLKR 1000


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 86  CRNTTRLEGSPPLTRVSGALCTLNSVLTFVMIMYVY*VVQF 208
           CR      GS P+T V+G+   + S  T  +++ VY  + F
Sbjct: 169 CRFFCGFFGSSPITTVAGSFSDMFSARTRGLVIAVYSAIIF 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,300,856
Number of Sequences: 5004
Number of extensions: 41351
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)