Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_O12
(653 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28407| Best HMM Match : SAM_PNT (HMM E-Value=3.4e-13) 62 3e-10
SB_33428| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 5e-06
SB_4156| Best HMM Match : Ets (HMM E-Value=0) 47 2e-05
SB_32098| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_30902| Best HMM Match : Lac_bphage_repr (HMM E-Value=3.5) 29 2.5
SB_33033| Best HMM Match : G-patch (HMM E-Value=0.71) 29 2.5
SB_27901| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_8425| Best HMM Match : EGF (HMM E-Value=0) 29 3.3
SB_891| Best HMM Match : DUF1098 (HMM E-Value=0.47) 29 3.3
SB_18759| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
>SB_28407| Best HMM Match : SAM_PNT (HMM E-Value=3.4e-13)
Length = 233
Score = 62.5 bits (145), Expect = 3e-10
Identities = 28/66 (42%), Positives = 39/66 (59%)
Frame = +1
Query: 436 EPXLWTXEDVSVFLKWCERXFDLPNFDMDLFQMNGKALCLLTKTXLGERCPAAXDVLHNV 615
+P LWT EDV+ +L+W + L N +D F+MNGKALCL+T R P VL++
Sbjct: 163 DPRLWTREDVTSWLRWISEAYSLENVKLDRFEMNGKALCLMTLDMFLYRVPEGGRVLYHD 222
Query: 616 LQMLVR 633
Q +R
Sbjct: 223 FQRRLR 228
>SB_33428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 48.4 bits (110), Expect = 5e-06
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +1
Query: 427 LPPEPXLWTXEDVSVFLKWCERXFDLPNFDMDLFQMNGKALCLLTKTXLGERCP 588
+PP+P LW+ DV +LKW +++ + D F MNGK +C+L R P
Sbjct: 118 VPPDPRLWSKWDVLEWLKWATERYNVKDVAADKFLMNGKGICMLPPEGFVYRVP 171
>SB_4156| Best HMM Match : Ets (HMM E-Value=0)
Length = 516
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +1
Query: 427 LPPEPXLWTXEDVSVFLKWCERXFDLPNFDMDLFQMNGKALCLLTKTXLGERCPA 591
+P +P WT E V ++ W + F L + D+D F ++G+ LC LT+ + PA
Sbjct: 161 VPADPLCWTKEHVRQWILWAIKEFSLKDIDIDRFNIDGRDLCRLTRDDFMKLAPA 215
>SB_32098| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 278
Score = 31.5 bits (68), Expect = 0.62
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 97 DTFGGITAAYACVWCSVYTEFCANFCDDNVRVLSCPVSVFNKDF 228
D GG+TA+ + + T C+NF D VR +SC +++ + F
Sbjct: 196 DVSGGVTASRSASAVTFIT--CSNFSSDYVRFMSCRIAIGVRSF 237
>SB_30902| Best HMM Match : Lac_bphage_repr (HMM E-Value=3.5)
Length = 240
Score = 29.5 bits (63), Expect = 2.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 109 GITAAYACVWCSVYTE 156
G TA YAC WC +Y +
Sbjct: 69 GATANYACAWCKIYKD 84
>SB_33033| Best HMM Match : G-patch (HMM E-Value=0.71)
Length = 696
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 439 VLAEDRLAVAXWCHQAVKEAVAPRVV 362
+L E VA WC Q +K+ +A R++
Sbjct: 260 ILTEKSHGVASWCEQLIKDMLASRII 285
>SB_27901| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 296 RLGPVWSGYRYHSVQQNYYGVTHYPGRH 379
RL P +R+H++Q NY + GRH
Sbjct: 43 RLPPTSDAFRFHAMQSNYVAKPIFRGRH 70
>SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1098
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 296 RLGPVWSGYRYHSVQQNYYGVTHYPGRH 379
RL P +R+H++Q NY + GRH
Sbjct: 260 RLPPTSDAFRFHAMQSNYVAKPIFRGRH 287
>SB_8425| Best HMM Match : EGF (HMM E-Value=0)
Length = 1955
Score = 29.1 bits (62), Expect = 3.3
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
Frame = -1
Query: 305 GPDGSCKLTTFITLIG*ADPELVALSKSLLKTETGQLSTRTLSSQKLAQNSV-YTEHQTH 129
G DGS + T L AD + +L TG +T+ Q++ S Y +
Sbjct: 1026 GADGSSQWVTSYKLEYSADGSKWTMYAKVL---TGNTDDKTIVRQQVQSFSARYVRFRPQ 1082
Query: 128 A*AAVIPPNVSCYGTP*TSSVSEGTNSQASVSNGSSTXD 12
A + I V YG + V++GT S +NG + D
Sbjct: 1083 AWSGEIAMRVEIYGCKESVPVAKGTCVSNSCTNGGTCVD 1121
>SB_891| Best HMM Match : DUF1098 (HMM E-Value=0.47)
Length = 715
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 177 ITKVSTEFSVHRAPDTRVSGGDPSKRVVLRHAVNQQRI*GNELASER 37
+TK VHRA TR G + SK + + N+ GN++++ R
Sbjct: 643 LTKQPGLLEVHRAQKTRNGGKNDSKTIRVEQKKNETMAKGNQMSNMR 689
>SB_18759| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 95 TTRLEGSPPLTRVSGA-LCTLNSVLTFVMIMYVY*VVQFLFSTRILTTQP 241
TTR++G PP+ + +G+ L L S+ + V + + F F T + QP
Sbjct: 35 TTRVQGGPPIAKFAGSYLVNLMSIASDVSMPMSMRLPGFEFGTERIRKQP 84
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,006,682
Number of Sequences: 59808
Number of extensions: 339695
Number of successful extensions: 1384
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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