Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_O12
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr...    29   2.9  
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele...    29   2.9  
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U70853-1|AAB09143.2|  439|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
           protein R107.8 protein.
          Length = 1429

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 3/80 (3%)
 Frame = +1

Query: 73  LVYGVP*HDTFGGITAAYACVWCSVYTEFCANFCDDNVRVLSCPVS---VFNKDFDNATS 243
           L+ G   H   G +       WC     F   +C+    V  C      VF+KD+   T 
Sbjct: 27  LICGRNGHCHAGPVNGTQTSYWCRCDEGFGGEYCEQQCDVSKCGADEKCVFDKDYRMETC 86

Query: 244 SGSAXPINVMKVVSLQLPSG 303
                 IN   ++    PSG
Sbjct: 87  VCKDCDINGNSLLKPSCPSG 106


>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
           C.elegans homeotic lin-12 protein gene, complete cds. ).
          Length = 1429

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 3/80 (3%)
 Frame = +1

Query: 73  LVYGVP*HDTFGGITAAYACVWCSVYTEFCANFCDDNVRVLSCPVS---VFNKDFDNATS 243
           L+ G   H   G +       WC     F   +C+    V  C      VF+KD+   T 
Sbjct: 27  LICGRNGHCHAGPVNGTQTSYWCRCDEGFGGEYCEQQCDVSKCGADEKCVFDKDYRMETC 86

Query: 244 SGSAXPINVMKVVSLQLPSG 303
                 IN   ++    PSG
Sbjct: 87  VCKDCDINGNSLLKPSCPSG 106


>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical
           protein W05B2.2 protein.
          Length = 1278

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +2

Query: 143 LCTLNSVLTFVMIMYVY*VVQFLFST 220
           +C+LN+ +TF++I+Y+   + F F T
Sbjct: 1   MCSLNNQVTFILIIYIQ--ISFTFGT 24


>U70853-1|AAB09143.2|  439|Caenorhabditis elegans Hypothetical
           protein M01H9.2 protein.
          Length = 439

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 112 ITAAYACVWCSVYTEFCANFCDDNVRVLSCPVSVFNKDFDNATS 243
           +   YA V+C      CA+FC+D+ + ++C      KD D+  S
Sbjct: 33  VRPGYAMVYCRKTCGNCADFCEDS-KFITCSAE-RKKDCDDMLS 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,984,008
Number of Sequences: 27780
Number of extensions: 241139
Number of successful extensions: 632
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)