Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_O12
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34412.1 68417.m04888 expressed protein                             30   1.5  
At4g30700.1 68417.m04351 pentatricopeptide (PPR) repeat-containi...    29   2.7  
At3g18180.1 68416.m02313 hypothetical protein contains Pfam doma...    29   2.7  

>At4g34412.1 68417.m04888 expressed protein
          Length = 143

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = -1

Query: 299 DGSCKL-TTFI--TLIG*ADPELVALSKSLLKTETGQLSTRTLSSQKLAQNSVYTEHQTH 129
           DGS KL  +F+  +LI    P L A  K+L+      LSTRTL S+ L  N   ++H T 
Sbjct: 32  DGSLKLEVSFLNASLIPDIFPLLAAAQKALISKSRDSLSTRTLHSE-LVYNYSGSKHITE 90

Query: 128 A 126
           +
Sbjct: 91  S 91


>At4g30700.1 68417.m04351 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 792

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 527 FK*TVKHYACLLKXIWVKGVLQXAMSYI 610
           F+ +VKHYAC++  +   G LQ A+ +I
Sbjct: 553 FEPSVKHYACMVDILGRAGHLQRALQFI 580


>At3g18180.1 68416.m02313 hypothetical protein contains Pfam domain,
           PF04577: Protein of unknown function (DUF563)
          Length = 470

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 112 SLQTCRVTARRKPAAYLRERTRKRAFRTA 26
           SL+   VT RRKP   +  R+R RAF  A
Sbjct: 288 SLRNSAVTTRRKPRILILSRSRSRAFVNA 316


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,066,597
Number of Sequences: 28952
Number of extensions: 216059
Number of successful extensions: 576
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)