Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_O10
(487 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 95 5e-21
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 89 3e-19
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 31 0.070
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 30 0.21
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb... 28 0.86
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 27 1.1
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 27 2.0
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 26 2.6
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 26 3.5
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 26 3.5
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 4.6
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp... 25 6.1
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 6.1
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 6.1
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 6.1
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 25 8.0
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 25 8.0
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 95.1 bits (226), Expect = 5e-21
Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Frame = +3
Query: 189 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 362
P KV K MG +I +RS++KPF+KVVNYNHLMPTRY ++ K +A K+P +R
Sbjct: 50 PLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSA 109
Query: 363 LRFNTRVRFEERYKSGKNKWFFXKLRF 443
R + FEE+Y+SGK+ WFF LRF
Sbjct: 110 ARKTVKKTFEEKYQSGKSAWFFTPLRF 136
Score = 68.9 bits (161), Expect = 4e-13
Identities = 27/58 (46%), Positives = 42/58 (72%)
Frame = +2
Query: 41 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRQSAQEDG 214
M KI+KPGKV L+ GR+AG+K ++++ D+G+ P+GHA VAG++RYP + + G
Sbjct: 1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMG 58
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 89.0 bits (211), Expect = 3e-19
Identities = 40/87 (45%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Frame = +3
Query: 189 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 362
P KV K MG +I KRS++KPF+KV+NYNHLMPTRY ++ K + +P++R
Sbjct: 50 PLKVTKSMGAKRIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSA 109
Query: 363 LRFNTRVRFEERYKSGKNKWFFXKLRF 443
+ + FEE+Y++GK+ WFF LRF
Sbjct: 110 AKKTVKNTFEEKYQTGKSAWFFTPLRF 136
Score = 72.5 bits (170), Expect = 3e-14
Identities = 29/58 (50%), Positives = 43/58 (74%)
Frame = +2
Query: 41 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRQSAQEDG 214
M KI+KPGKV LV GR+AG+K ++++N D+G+ P+GHA VAG++RYP + + G
Sbjct: 1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMG 58
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 31.5 bits (68), Expect = 0.070
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +2
Query: 32 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDE 133
P+K+ + PG V ++L+GR+ G++ +V+ ++
Sbjct: 45 PTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED 78
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 29.9 bits (64), Expect = 0.21
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = -3
Query: 329 CAEFFKAEVNCITCWHQVIIVYNLHERLYLGPLVDFILSHPLVHFAGGTCRY 174
CA+F E N + WH YNL R Y + D + P G C Y
Sbjct: 772 CAKFSLKETNKTSFWHS---SYNLFNRQYHVDMPDNVSDLPQTRLCYGACVY 820
>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 225
Score = 27.9 bits (59), Expect = 0.86
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 213 GKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDF-SFEKFSAKDLKDP 347
G + I R K P K+VNYNH + + +F K D+ DP
Sbjct: 28 GNHWIFARFKFYPLNKIVNYNHFHSSSCQSEAKNFYKQFEGDISDP 73
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 27.5 bits (58), Expect = 1.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 47 KIMKPGKVVLVLSGRYAGRKAIVVKNYD 130
+ ++ G+VVLV G Y G+ A++V D
Sbjct: 6 RYVEVGRVVLVTKGEYTGKLAVIVDIVD 33
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 26.6 bits (56), Expect = 2.0
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -2
Query: 147 LSEVPSS*FLTTIALRPAYRPLKTSTTLPGFIILPILEGYSLY 19
L E+P + F T+ AY P S T+ G + G +Y
Sbjct: 689 LEEIPYNKFFKTVEKNEAYNPSSKSATIDGLQRYTSMIGNQIY 731
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 26.2 bits (55), Expect = 2.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 273 YSLQPSRKALSWTSCGFYSFPSSCALC 193
YS+ PS +L W + + S PS LC
Sbjct: 16 YSILPSYSSLQWITNAWCSLPSIYILC 42
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.8 bits (54), Expect = 3.5
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +3
Query: 306 FSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFXKLR 440
+SF F D K+ K K R E Y +N+W F + R
Sbjct: 284 YSFFAFMYVDEKEWEKLKSFNVPLSERIVECYLDDENRWRFLRFR 328
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 3.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 344 VFQVFCAEFFKAEVNCITCWHQVIIVYNLHERLY 243
V+QVFC F A+ I +Q++ V NL E Y
Sbjct: 315 VYQVFCTNFPNAQQLIIDNQNQLLKVANLLEPSY 348
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.4 bits (53), Expect = 4.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 76 QHYFTRLHYLTHLGGIFPLLVD 11
Q YFT ++ G +FP +VD
Sbjct: 803 QQYFTAIYKFEGCGSVFPFVVD 824
>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 6.1
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Frame = +3
Query: 192 GKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVD---FSFEKFSAKDLKDPAKRKK 362
G V + +G +IHK PF N N +TV F+ E + L D K K
Sbjct: 286 GLVTQPLGLFRIHKLPLALPFTNHANSNEAGDLSFTVSKRRFTIEPWVLPPLDDEQKDTK 345
Query: 363 L 365
+
Sbjct: 346 I 346
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.0 bits (52), Expect = 6.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 195 KVHKRMGKNKIHKRSKIKPFVKVV 266
K+ KR+G I SK+ P VK+V
Sbjct: 205 KIAKRIGFTDISLSSKLTPMVKIV 228
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.0 bits (52), Expect = 6.1
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 300 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 416
+ F K L DP+ R+K F ++ + +Y+ KN
Sbjct: 150 LQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKN 188
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 6.1
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 300 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEER 398
VD++ E+F DP+ + NT ++ E+R
Sbjct: 821 VDYAIERFCQFTALDPSSVPGTQLNTAIKVEDR 853
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 24.6 bits (51), Expect = 8.0
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +3
Query: 243 IKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRFNTR 380
+ PF K Y H + T + S KF + K K R +TR
Sbjct: 39 VSPFFKKERYKHHLETNVSSHQSATKFIEPEPSPTKKTKLTRRDTR 84
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 24.6 bits (51), Expect = 8.0
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 300 LYNVLASSDYSLQPSRKALSWTSCGFY 220
LY L+ S + P R W SC FY
Sbjct: 246 LYRGLSVSMLKVAPGRYECLWLSCHFY 272
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,005,096
Number of Sequences: 5004
Number of extensions: 40768
Number of successful extensions: 146
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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