Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_O10
(487 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0) 106 1e-23
SB_18962| Best HMM Match : Ribosomal_L19e (HMM E-Value=3.7) 30 1.2
SB_11666| Best HMM Match : Arc (HMM E-Value=5) 30 1.2
SB_36666| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_39090| Best HMM Match : zf-piccolo (HMM E-Value=0.81) 28 4.7
SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_57833| Best HMM Match : RnaseH (HMM E-Value=0.18) 28 4.7
SB_24332| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_35383| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_4267| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003) 27 6.2
SB_16188| Best HMM Match : KOW (HMM E-Value=5.7e-16) 27 6.2
SB_47533| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_14764| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 27 8.2
>SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0)
Length = 168
Score = 106 bits (254), Expect = 1e-23
Identities = 53/85 (62%), Positives = 61/85 (71%), Gaps = 2/85 (2%)
Frame = +3
Query: 189 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK-FSAKDL-KDPAKRKK 362
P KV KRMGK + KRSK+KPFVKV NYNHLMPTRY+VD +K KD+ +DPA +KK
Sbjct: 50 PLKVTKRMGKKRTAKRSKVKPFVKVFNYNHLMPTRYSVDVPLDKQVVNKDVFRDPALKKK 109
Query: 363 LRFNTRVRFEERYKSGKNKWFFXKL 437
+ EERYKSGKNKWFF KL
Sbjct: 110 ALREVKSTLEERYKSGKNKWFFQKL 134
Score = 93.1 bits (221), Expect = 1e-19
Identities = 41/71 (57%), Positives = 54/71 (76%)
Frame = +2
Query: 41 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRQSAQEDGKE 220
MGK +K GKVVLVL GRYAG+KA+++KNYD+G+SDKPYGHA VAG+ RYP + + GK+
Sbjct: 1 MGKFIKSGKVVLVLRGRYAGKKALIIKNYDDGSSDKPYGHALVAGVARYPLKVTKRMGKK 60
Query: 221 *NPQEVQDKAF 253
+ + K F
Sbjct: 61 RTAKRSKVKPF 71
>SB_18962| Best HMM Match : Ribosomal_L19e (HMM E-Value=3.7)
Length = 351
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +1
Query: 34 LQDG*DNEAG*SSAGLKWPVRGSQGYRSQELRRRYLRQAVRACFRRWYRQVPPAKCTRGW 213
L++G + G S+A L P RG G + + R Y + ++A R + + PP + R +
Sbjct: 269 LENGGKHPLGSSTALLYLP-RGLAGRGRKGVEREYAQTKIKAAVRLYTNRDPPMEVLRKF 327
Query: 214 ERIKSTRGPR 243
E +G R
Sbjct: 328 ETRAEEKGRR 337
>SB_11666| Best HMM Match : Arc (HMM E-Value=5)
Length = 235
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +1
Query: 34 LQDG*DNEAG*SSAGLKWPVRGSQGYRSQELRRRYLRQAVRACFRRWYRQVPPAKCTRGW 213
L++G + G S+A L P RG G + + R Y + ++A R + + PP + R +
Sbjct: 129 LENGGKHPLGSSTALLYLP-RGLAGRGRKGVEREYAQTKIKAAVRLYTNRDPPMEVLRKF 187
Query: 214 ERIKSTRGPR 243
E +G R
Sbjct: 188 ETRAEEKGRR 197
>SB_36666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 28.3 bits (60), Expect = 3.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 279 SDYSLQPSRKALSWTSCG 226
S Y ++P K+L W SCG
Sbjct: 2 SSYRIKPKNKSLGWVSCG 19
>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1884
Score = 28.3 bits (60), Expect = 3.6
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +3
Query: 120 RITTKVPPTSRTGMLSSLVSTGTPGKVHKRMG-KNKIHKRSKIK-PFVKVVNYNHLMP-T 290
+++ VPPT+ +L G V RMG K+ + K+ P + +++Y P
Sbjct: 1283 KVSEPVPPTTIFSLLLDTDEKAFQGNVKTRMGLLTKLAEYFKVTIPDIHIISYKPEDPGI 1342
Query: 291 RYTVDFSFEKFSAKDLKDPAKRK 359
R+T F F K PA K
Sbjct: 1343 RFT--FGFSNVPTKPCDSPALAK 1363
>SB_39090| Best HMM Match : zf-piccolo (HMM E-Value=0.81)
Length = 245
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -1
Query: 388 KRTRVLKRSFLRFAGSFRSFALNFSKL 308
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 100 KNTKELQ-TFLGFASYYRSFVKNFSKV 125
>SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2028
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -1
Query: 388 KRTRVLKRSFLRFAGSFRSFALNFSKL 308
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 598 KNTKELQ-TFLGFASYYRSFVKNFSKV 623
>SB_57833| Best HMM Match : RnaseH (HMM E-Value=0.18)
Length = 366
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -1
Query: 388 KRTRVLKRSFLRFAGSFRSFALNFSKL 308
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 61 KNTKELQ-TFLGFASYYRSFVKNFSKV 86
>SB_24332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = -2
Query: 183 LSIPATKACPYGLSEVPSS*FLTTIALRP--AYRPLKTSTTLPGFIILPILEGY 28
+S+ A+ + PY +P+S FL ++ P Y+PL P + L Y
Sbjct: 13 VSLQASASYPYKPPRIPTSLFLVSLQAPPLYTYKPLPRIPASPSLVFLQAPPSY 66
>SB_35383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +3
Query: 327 AKDL--KDPAKRKKLRFNTRVRFEERYKSGKNKWFFXKLRF 443
+KDL + P +K FN + E R++ G K F+ +LRF
Sbjct: 2 SKDLLGERPMYARKDAFNAYLTMERRFEKGDIKTFWRELRF 42
>SB_4267| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -1
Query: 388 KRTRVLKRSFLRFAGSFRSFALNFSKL 308
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 61 KNTKELQ-TFLGFASYYRSFVENFSKV 86
>SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003)
Length = 1205
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -1
Query: 388 KRTRVLKRSFLRFAGSFRSFALNFSKL 308
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 677 KNTKELQ-TFLGFASYYRSFVENFSKV 702
>SB_16188| Best HMM Match : KOW (HMM E-Value=5.7e-16)
Length = 105
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 26 EYPS-KMGKIMKPGKVVLVLSGRYAGRKAIVVKNYD 130
++P+ ++GK K G V V+ GRY G ++V+ D
Sbjct: 58 DFPAHELGKHFKMGDHVKVIGGRYEGDTGLIVRVED 93
>SB_47533| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 352
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 177 STGTPGKVHKRMGKNKIHKRSKIKPFVKVVNYNHL 281
STG PG HKR G + + P+++ V+Y H+
Sbjct: 142 STGNPGLEHKRSGHSLV-----FLPYMEGVSYRHV 171
>SB_14764| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 820
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 228 GFYSFPSSCALCRGYLSIPATKACPYGLSEVPSS 127
G+ PS+ GY +P+ K G EVPSS
Sbjct: 332 GYTGVPSNKKSGTGYTGVPSNKKPGTGYKEVPSS 365
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,085,265
Number of Sequences: 59808
Number of extensions: 309378
Number of successful extensions: 836
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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