Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_O10
         (487 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U89308-1|AAB48626.1|  136|Caenorhabditis elegans ribosomal prote...   112   1e-25
AF003143-5|AAK68266.1|  136|Caenorhabditis elegans Ribosomal pro...   112   1e-25
Z81540-2|CAB04403.1|  190|Caenorhabditis elegans Hypothetical pr...    31   0.59 
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr...    30   0.77 
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr...    30   0.77 
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr...    30   0.77 
U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    29   1.4  
Z81540-9|CAD89742.1|  740|Caenorhabditis elegans Hypothetical pr...    28   3.1  
Z81043-1|CAB02799.1|  755|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AF022969-4|AAB69889.1|  202|Caenorhabditis elegans Hypothetical ...    27   7.2  
AF000263-3|AAL77185.1|  697|Caenorhabditis elegans Hypothetical ...    27   7.2  
AF000263-2|AAK21464.1|  755|Caenorhabditis elegans Hypothetical ...    27   7.2  
AF000263-1|AAK21462.1|  781|Caenorhabditis elegans Hypothetical ...    27   7.2  
Z81068-8|CAB02988.1|  490|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z68117-2|CAA92178.1|  333|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U42848-3|AAA83609.1|  693|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    27   9.5  
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    27   9.5  
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    27   9.5  

>U89308-1|AAB48626.1|  136|Caenorhabditis elegans ribosomal protein
           L27 homolog protein.
          Length = 136

 Score =  112 bits (269), Expect = 1e-25
 Identities = 51/87 (58%), Positives = 67/87 (77%), Gaps = 2/87 (2%)
 Frame = +3

Query: 189 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 362
           P KV K MGK KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K   + + LK P+K++K
Sbjct: 50  PLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRK 109

Query: 363 LRFNTRVRFEERYKSGKNKWFFXKLRF 443
                + +FEERYK+GKNKWFF KLRF
Sbjct: 110 ALVEVKSKFEERYKTGKNKWFFTKLRF 136



 Score = 91.5 bits (217), Expect = 3e-19
 Identities = 41/60 (68%), Positives = 49/60 (81%)
 Frame = +2

Query: 41  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRQSAQEDGKE 220
           MGKIMKPGKVVLVL G+YAGRKA+VVK  DEG SD+ Y HA +AGIDRYP +  ++ GK+
Sbjct: 1   MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60


>AF003143-5|AAK68266.1|  136|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 27 protein.
          Length = 136

 Score =  112 bits (269), Expect = 1e-25
 Identities = 51/87 (58%), Positives = 67/87 (77%), Gaps = 2/87 (2%)
 Frame = +3

Query: 189 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 362
           P KV K MGK KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K   + + LK P+K++K
Sbjct: 50  PLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRK 109

Query: 363 LRFNTRVRFEERYKSGKNKWFFXKLRF 443
                + +FEERYK+GKNKWFF KLRF
Sbjct: 110 ALVEVKSKFEERYKTGKNKWFFTKLRF 136



 Score = 91.5 bits (217), Expect = 3e-19
 Identities = 41/60 (68%), Positives = 49/60 (81%)
 Frame = +2

Query: 41  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRQSAQEDGKE 220
           MGKIMKPGKVVLVL G+YAGRKA+VVK  DEG SD+ Y HA +AGIDRYP +  ++ GK+
Sbjct: 1   MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60


>Z81540-2|CAB04403.1|  190|Caenorhabditis elegans Hypothetical
           protein F46B3.2 protein.
          Length = 190

 Score = 30.7 bits (66), Expect = 0.59
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 240 WTSCGFY-SFPSSCALCRGYLSIPAT 166
           W +C F+ + P SC LC G ++ PAT
Sbjct: 112 WDNCPFFKNCPLSCGLCTGNVTTPAT 137


>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = +2

Query: 71  VLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRQSAQEDGKE*NPQEVQDKA 250
           ++ ++G  +G KA+    Y   + D PYG + + G+  Y   +A  D    +P +VQ   
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY--MAAHVDN---SPAQVQSIT 230

Query: 251 FREGCKL 271
            R+G  L
Sbjct: 231 IRQGNSL 237


>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = +2

Query: 71  VLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRQSAQEDGKE*NPQEVQDKA 250
           ++ ++G  +G KA+    Y   + D PYG + + G+  Y   +A  D    +P +VQ   
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY--MAAHVDN---SPAQVQSIT 230

Query: 251 FREGCKL 271
            R+G  L
Sbjct: 231 IRQGNSL 237


>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = +2

Query: 71  VLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRQSAQEDGKE*NPQEVQDKA 250
           ++ ++G  +G KA+    Y   + D PYG + + G+  Y   +A  D    +P +VQ   
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY--MAAHVDN---SPAQVQSIT 230

Query: 251 FREGCKL 271
            R+G  L
Sbjct: 231 IRQGNSL 237


>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +2

Query: 47  KIMKPGKVVLVLSGRYAGRKAIVVK 121
           K + PG V++VL+GR+ G++ + +K
Sbjct: 69  KTLTPGTVLIVLAGRHKGKRVVFLK 93


>Z81540-9|CAD89742.1|  740|Caenorhabditis elegans Hypothetical
           protein F46B3.17 protein.
          Length = 740

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 107 PCDPRTGHLRPALLYPASLSYPSWRDIPFTR*H 9
           P D  TGH RPAL  P     PS + +P  + H
Sbjct: 550 PLDSGTGHSRPALFAPPRAQLPS-QSVPKAQAH 581


>Z81043-1|CAB02799.1|  755|Caenorhabditis elegans Hypothetical
           protein C29F3.1 protein.
          Length = 755

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +3

Query: 150 RTGMLSSLVSTGTPGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 320
           RT +L +  +    G+ H     N+  KR KI    +   YNHL+P   T+D+S  K
Sbjct: 377 RTVLLDANQAGVERGQNHVATHLNRQLKRQKISKLEREKIYNHLVP---TIDYSAMK 430


>AF022969-4|AAB69889.1|  202|Caenorhabditis elegans Hypothetical
           protein C29G2.6 protein.
          Length = 202

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -2

Query: 288 LASSDYSLQPSRKALSWTSCGFYSFPSSCALCRGYLSIPATKACPYG 148
           +A S+  +    K L    C F+ F  SC  C G+++    + C  G
Sbjct: 117 VAESNQDIFQINKCLR-QDCAFHCFDGSCPKCSGFITRVFNQMCAAG 162


>AF000263-3|AAL77185.1|  697|Caenorhabditis elegans Hypothetical
           protein T08B2.7c protein.
          Length = 697

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 219 NKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 320
           NK  KR KI    K   YNHL+P   T+D+S  K
Sbjct: 426 NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456


>AF000263-2|AAK21464.1|  755|Caenorhabditis elegans Hypothetical
           protein T08B2.7b protein.
          Length = 755

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 219 NKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 320
           NK  KR KI    K   YNHL+P   T+D+S  K
Sbjct: 400 NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 430


>AF000263-1|AAK21462.1|  781|Caenorhabditis elegans Hypothetical
           protein T08B2.7a protein.
          Length = 781

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 219 NKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 320
           NK  KR KI    K   YNHL+P   T+D+S  K
Sbjct: 426 NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456


>Z81068-8|CAB02988.1|  490|Caenorhabditis elegans Hypothetical
           protein F25H5.7 protein.
          Length = 490

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
 Frame = +2

Query: 29  YPSKMGKIMKPGKVVLVLS----GRYAGR--KAIVVKNYDEGTSDKPYGHAFVAGIDRYP 190
           YP K+G+++K GK  + L+       AG    A+ V N ++ +S+  Y +     +  +P
Sbjct: 289 YPEKLGEVVKFGKYEITLTECKEEAIAGTIWNALTVTNTEDASSEPLYMNH--VQVPWWP 346

Query: 191 RQSAQEDGK 217
            Q A ED +
Sbjct: 347 DQLAPEDAR 355


>Z68117-2|CAA92178.1|  333|Caenorhabditis elegans Hypothetical
           protein F45E6.4 protein.
          Length = 333

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -2

Query: 288 LASSDYSLQPSRKALSWTSCGFYS--FPSSC 202
           LAS++Y + P + A ++ +CG  +  FP +C
Sbjct: 195 LASANYGMCPCQHAFAFPACGMETGFFPGTC 225


>U42848-3|AAA83609.1|  693|Caenorhabditis elegans Hypothetical
           protein C31H1.1 protein.
          Length = 693

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 301 LTSALKNSAQKT*KTLQNVRSCVSTREYVLK 393
           L  AL+NSAQK    L ++ + VST  Y L+
Sbjct: 651 LFDALQNSAQKCGVALSDLMTAVSTSSYSLE 681


>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
            protein precursor protein.
          Length = 2272

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -1

Query: 391  SKRTRVLK-RSFLRFAGSFRSFALNFSKLKSTV 296
            S+ T V + +SFL   G +R F LNF+++ S++
Sbjct: 1250 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1282


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
            protein, isoforma protein.
          Length = 2175

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -1

Query: 391  SKRTRVLK-RSFLRFAGSFRSFALNFSKLKSTV 296
            S+ T V + +SFL   G +R F LNF+++ S++
Sbjct: 1153 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1185


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
            protein, isoformb protein.
          Length = 2186

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -1

Query: 391  SKRTRVLK-RSFLRFAGSFRSFALNFSKLKSTV 296
            S+ T V + +SFL   G +R F LNF+++ S++
Sbjct: 1164 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,979,528
Number of Sequences: 27780
Number of extensions: 222145
Number of successful extensions: 722
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)