Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_O07
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...   233   1e-62
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    27   2.4  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   5.5  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    26   5.5  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    26   5.5  
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch...    25   7.2  
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos...    25   7.2  

>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score =  233 bits (571), Expect = 1e-62
 Identities = 108/162 (66%), Positives = 129/162 (79%), Gaps = 1/162 (0%)
 Frame = +1

Query: 169 YKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIET 348
           YK+AD  LA +GRKE+ +AE EMPGL+A R KYA ++ LKGARIAG LHMT+QTAVLIET
Sbjct: 6   YKVADISLAAFGRKELEIAENEMPGLIAVREKYAKSQPLKGARIAGCLHMTIQTAVLIET 65

Query: 349 LIELGAEVQWSSSNIYSTQDEXXXXXXXXXIPIYAWKGETDDXYIWCIEQTL-IFPDGKP 525
           L+ LGAEV WSS NIYSTQD          +P++AWKGET++ Y+WCIEQ L  FP GKP
Sbjct: 66  LVALGAEVTWSSCNIYSTQDHAAAAIAATGVPVFAWKGETEEEYLWCIEQQLKSFPSGKP 125

Query: 526 LNMILDDGGDLTNLVHTKYPDLLKDVKXITEXTTTGVHNLYK 651
           LNMILDDGGDLT LVH ++P+LL D++ I+E TTTGVHNLYK
Sbjct: 126 LNMILDDGGDLTALVHERHPELLVDIRGISEETTTGVHNLYK 167


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = -3

Query: 300 YSGTFEYFSWSIFPTTCHKAWHFFLC*HNFFSAPFSQFLVSDFVRRLHFVVQSLIY 133
           Y   +  ++W  F  T +K  H+FL  H +   P + F+         F V S+++
Sbjct: 356 YDDWWNCWTWDQFARTWNKPVHYFLLRHVY--VPLNSFMSKSLSTFFTFFVSSVLH 409


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 605 FTSFKRSGYLVWTKFVKSPPSSKIILRGF 519
           +  F++ G L + K VK P + + + RGF
Sbjct: 294 YNHFRQFGPLAYAKLVKDPATDRSLGRGF 322


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +1

Query: 25  FLCTRTRSTTINVPTLFPGYFNKNNLKRKQQVNLP*VYQTLYYKMKPPYKIAD 183
           FL  RT+++   +  L P    KNN+ + + +N P VY+ +      PY IAD
Sbjct: 215 FLRLRTKASLSKLQALLPEVAWKNNMNQWELLN-P-VYKDVRVFDWRPYSIAD 265


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +3

Query: 210 RNYVSRERNARPYGMSSEICSS*NTQRCQNSRQLTHDSTNSGSY*DFNRIGSRGTMVQQ* 389
           R+Y    R ++PY  S    SS        S  ++  STNS      N   SR T + + 
Sbjct: 90  RSYSGNPRLSKPYASSKLAASSRTASYQAMSYSVSPTSTNSSVATSLNYQSSRETGISKD 149

Query: 390 H 392
           H
Sbjct: 150 H 150


>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
           Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 148

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 425 WLPXEYPSMPGREKLMTSIF 484
           +LP EYP MP   + +T I+
Sbjct: 56  FLPDEYPMMPPNVRFLTKIY 75


>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 196

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 260 RRHAIRPGISFSANIISFRPHSANFSS 180
           R  A++PG +   +I  +RP   NF+S
Sbjct: 31  RERAVKPGYTAPEDIKRYRPGRGNFAS 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,636,570
Number of Sequences: 5004
Number of extensions: 53613
Number of successful extensions: 133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)