Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_O07
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13940.1 68417.m02157 adenosylhomocysteinase / S-adenosyl-L-h...   159   2e-39
At3g23810.1 68416.m02993 adenosylhomocysteinase, putative / S-ad...   153   7e-38
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    29   2.7  

>At4g13940.1 68417.m02157 adenosylhomocysteinase /
           S-adenosyl-L-homocysteine hydrolase / AdoHcyase (SAHH)
           identical to SP|O23255 Adenosylhomocysteinase (EC
           3.3.1.1) (S-adenosyl-L-homocysteine hydrolase)
           (AdoHcyase) {Arabidopsis thaliana}; strong similarity to
           SP|P50248 Adenosylhomocysteinase (EC 3.3.1.1) {Nicotiana
           sylvestris}
          Length = 485

 Score =  159 bits (385), Expect = 2e-39
 Identities = 77/156 (49%), Positives = 102/156 (65%), Gaps = 2/156 (1%)
 Frame = +1

Query: 169 YKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIET 348
           YK+ D   A++GR E+ LAE EMPGLMACR ++ P++  KGARI GSLHMT+QTAVLIET
Sbjct: 14  YKVKDMSQADFGRLELELAEVEMPGLMACRTEFGPSQPFKGARITGSLHMTIQTAVLIET 73

Query: 349 LIELGAEVQWSSSNIYSTQDEXXXXXXXXXIPIYAWKGETDDXYIWCIEQTLIFPDGKPL 528
           L  LGAEV+W S NI+STQD            ++AWKGET   Y WC E+ L +  G   
Sbjct: 74  LTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCTERALDWGPGGGP 133

Query: 529 NMILDDGGDLTNLVH--TKYPDLLKDVKXITEXTTT 630
           ++I+DDGGD T L+H   K  ++ +    + + T+T
Sbjct: 134 DLIVDDGGDATLLIHEGVKAEEIFEKTGQVPDPTST 169


>At3g23810.1 68416.m02993 adenosylhomocysteinase, putative /
           S-adenosyl-L-homocysteine hydrolase, putative /
           AdoHcyase, putative strong similarity to
           SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1)
           (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
           {Nicotiana sylvestris}; contains Pfam profile PF00670:
           S-adenosyl-L-homocysteine hydrolase, NAD binding domain
          Length = 485

 Score =  153 bits (372), Expect = 7e-38
 Identities = 73/135 (54%), Positives = 93/135 (68%)
 Frame = +1

Query: 169 YKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIET 348
           YK+ D   A++GR EI LAE EMPGL++C  ++ P++ LKGARI GSLHMT+QTAVLIET
Sbjct: 14  YKVKDMSQADFGRLEIELAEVEMPGLVSCVTEFGPSQPLKGARITGSLHMTIQTAVLIET 73

Query: 349 LIELGAEVQWSSSNIYSTQDEXXXXXXXXXIPIYAWKGETDDXYIWCIEQTLIFPDGKPL 528
           L  LGAEV+W S NI+STQD            ++AWKGET   Y WC E+ L +  G   
Sbjct: 74  LTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCTERALDWGPGGGP 133

Query: 529 NMILDDGGDLTNLVH 573
           ++I+DDGGD T L+H
Sbjct: 134 DLIVDDGGDATLLIH 148


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -2

Query: 559 LSHPHHPRSY*EAFHQGRSMFVQYTKYTXHQFLPSRHRWVFXRQPVQLRPRLVYY-KCYC 383
           L HPHH         Q   +  QY  +     LPSRHR +  R+    R  L +  +   
Sbjct: 626 LLHPHHL-----LLPQLSHLPHQYLHHRLRHILPSRHRHLLRRKHTIHRNHLHHNPRNLQ 680

Query: 382 WTIVPLLPILL 350
           +T +PLLP+ L
Sbjct: 681 FTALPLLPLYL 691


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,498,182
Number of Sequences: 28952
Number of extensions: 271728
Number of successful extensions: 629
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)