Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_O06
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...   120   2e-28
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    28   1.3  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    27   1.8  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    27   2.3  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    26   5.4  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    25   9.4  

>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score =  120 bits (288), Expect = 2e-28
 Identities = 60/138 (43%), Positives = 83/138 (60%)
 Frame = +2

Query: 233 FYNEQQDFEDDANAVLGASDEKNCTYSTGYIKRQAIYACITCCPEAKDDQNQRAGVCLAC 412
           +  +Q++ E +A  VL  S +  CTYS GY+K Q +YAC+TC  +A    N    VC +C
Sbjct: 13  YVEQQRELEREAREVLPYSFD-TCTYSMGYLK-QPLYACLTC-QKASGSLN---AVCYSC 66

Query: 413 SIACHENHDLVELYTKRNFRCDCGNPKFKSHPCQFTPNKTDFNEDNIYNQNFSGLYCICH 592
           SI+CH +HDLV+L+ KR+FRCDCG  +  S PC    +  +   +N YN NF G +CIC 
Sbjct: 67  SISCHADHDLVDLFNKRHFRCDCGTTRTHSIPCNLRKSVDECGSENDYNHNFEGRFCICD 126

Query: 593 RPYPDPXATFEDEMIQCV 646
             Y +P  T E  M QC+
Sbjct: 127 TVY-NP-ETEEGTMFQCI 142


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
 Frame = +2

Query: 290 DEKNCTYSTGYIKR--QAIYACITCCPEAKDDQNQRAGVCLACSIAC-HENHDL-VELYT 457
           D+++ +   G++ R  + IY C  C        +    +C  C  A  HE H+  V + T
Sbjct: 90  DKRSGSKVCGHVFRAGEVIYRCKNC------GLDNTCVLCAPCFHATNHEGHETHVSIST 143

Query: 458 KRNFRCDCGNPK 493
             +  CDCG+P+
Sbjct: 144 SYSGICDCGDPE 155


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -3

Query: 181  LHLYSHRSWTCLRNNYLRD---FKRQ*CNVEXILILQKSRLITRQSYFL 44
            LHL+S   W C  ++YL++    K      E ILI +K  ++ +  Y +
Sbjct: 1128 LHLFSFFYWKCQHDDYLQENTSSKNNLLQKEWILITKKKVILEQCEYVI 1176


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -3

Query: 610 WIRIRSMANTVKSTKVLIINIIF----IEVSLIWCELTRVGFKFWV 485
           W+    +A+    T++LI+   +    I +  ++ ++ R+G KFW+
Sbjct: 190 WMNTLKIASQASKTELLIVGTAYACMLISIVSLYLKMRRLGSKFWL 235


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = +1

Query: 70  TGFFAKLRXILHYITVV*SLLSNYF*DMSTNGVNTNEDVDMADCDGEKVVTMLDVLQRTA 249
           + F +  +   H   ++ S LS +  D++  G+N N+ V + +    K V    +LQ+ A
Sbjct: 343 SSFVSYFKEWRHAKLLIGSALSWFLLDIAFYGINLNQSVILQEMGFNKGVNEYHILQKNA 402


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 148 LRNNYLRDFKRQ*CNVEXILILQKSR 71
           +R+N LR+F    C +E + IL  SR
Sbjct: 82  IRSNVLREFPESLCRLESLEILDISR 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,777
Number of Sequences: 5004
Number of extensions: 56626
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)