Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_O06
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0304 + 19315546-19315656,19315780-19315938,19316045-193161... 98 5e-21
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 43 2e-04
02_01_0695 - 5202091-5202498,5204103-5204588 30 1.8
08_02_1589 + 28070286-28070525,28072224-28072565 29 4.2
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497... 29 4.2
10_06_0110 + 10889414-10889669,10889756-10889806,10890595-108911... 27 9.7
>06_03_0304 +
19315546-19315656,19315780-19315938,19316045-19316105,
19316620-19316690,19318323-19318622,19319160-19319798,
19320772-19320831
Length = 466
Score = 98.3 bits (234), Expect = 5e-21
Identities = 42/68 (61%), Positives = 46/68 (67%)
Frame = +2
Query: 440 LVELYTKRNFRCDCGNPKFKSHPCQFTPNKTDFNEDNIYNQNFSGLYCICHRPYPDPXAT 619
+VEL+TKR FRCDCGN KF SH C+ P K N N YN NF G YC C RPYPDP A
Sbjct: 148 VVELWTKRKFRCDCGNSKFGSHVCKLCPEKDPENPVNSYNHNFKGSYCTCGRPYPDPEAE 207
Query: 620 FEDEMIQC 643
+ EMIQC
Sbjct: 208 KQVEMIQC 215
Score = 74.5 bits (175), Expect = 6e-14
Identities = 32/62 (51%), Positives = 42/62 (67%)
Frame = +2
Query: 257 EDDANAVLGASDEKNCTYSTGYIKRQAIYACITCCPEAKDDQNQRAGVCLACSIACHENH 436
E +A+ VLG D K CTY GY+KRQA+++C+TC P AGVC ACS+ACH+ H
Sbjct: 36 ELEADLVLGGDDGKECTYGGGYLKRQAVFSCLTCVPAGV------AGVCTACSLACHDGH 89
Query: 437 DL 442
+L
Sbjct: 90 EL 91
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 43.2 bits (97), Expect = 2e-04
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Frame = +2
Query: 248 QDFEDDANAVLGASDEKNCTYSTG--YIKRQAIYACITCCPEAKDDQNQRAGVCLACSIA 421
+D E+D N+ + K CT+++ Q Y C TC D G C C+
Sbjct: 1578 RDEEEDGNSERALAT-KVCTFTSSGSNFMEQHWYFCYTC------DLTVSKGCCSVCAKV 1630
Query: 422 CHENHDLVELYTKRNFRCDCGNPKFKSHPCQ 514
CH+ H +V + R F CDCG + CQ
Sbjct: 1631 CHQGHRVVYSRSSR-FFCDCGAGGVRGSSCQ 1660
>02_01_0695 - 5202091-5202498,5204103-5204588
Length = 297
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +2
Query: 272 AVLGASDEKNCTYSTGYIKRQAIYACITCCPEAKDDQNQRAGVCLACSIACH 427
++LGA + C G + + C+TC A D A C C +A H
Sbjct: 15 SLLGARFFEACAAHRGMSRNECNQYCLTCAAAADDAGGAAAVGCQWCVVAAH 66
>08_02_1589 + 28070286-28070525,28072224-28072565
Length = 193
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = +2
Query: 257 EDDANAVLGASDEKNCTYSTGYIKRQAIYACITCCPEAKDDQNQRAGVCL-AC 412
+DD NA D+ + +TG + AC KD+ + A C AC
Sbjct: 133 KDDINAAAAGKDDIDAATATGNDEFATAAACFNAAAAGKDEFDAAAAACFNAC 185
>02_03_0390 + 18448671-18448889,18449567-18449632,18449702-18449761,
18449864-18449959,18452287-18452447,18452669-18452790,
18452872-18453239,18453653-18453739,18453835-18453969,
18454349-18454471,18454771-18454854,18455023-18455187,
18455310-18455486,18455660-18455773,18455912-18456016,
18457056-18457174,18457244-18457385,18457461-18457555,
18457757-18457862,18458125-18458204,18458285-18458461,
18459828-18459912,18460024-18460104,18460208-18460351,
18460468-18460563,18460654-18460854,18461462-18461895,
18462417-18462478,18462622-18462872,18462956-18463030,
18463110-18463300,18463696-18463867,18463956-18464020,
18464646-18464778,18464861-18464962,18465047-18465130,
18465656-18465730,18465818-18465877,18465967-18466223,
18466560-18466608,18466781-18466941,18467013-18467079,
18467174-18467299,18467422-18467592,18468566-18468769,
18469059-18469165,18469608-18469737,18469774-18469959,
18470704-18470742
Length = 2202
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 372 KTIKTRELESAWHAASLAMKTMIWSSYIQKGTS 470
K+ K R ++ W A L MKT SY+++ S
Sbjct: 1435 KSAKRRSIQDGWDLAELQMKTTAECSYLEQTVS 1467
>10_06_0110 +
10889414-10889669,10889756-10889806,10890595-10891163,
10891178-10891660,10891747-10891944,10893300-10893354,
10893372-10893631
Length = 623
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 288 PTRRTAPILRAT*NVKPFTPALHAALKPKTIKTRELESAWHAASLA 425
PT P+ T + PFT ALH A + ++ W A++A
Sbjct: 18 PTSSPLPLPPITIHAPPFTRALHHAASSFPLLSQHRSHRWKGAAVA 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,724,019
Number of Sequences: 37544
Number of extensions: 351324
Number of successful extensions: 904
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -