Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_O06
(648 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48572| Best HMM Match : No HMM Matches (HMM E-Value=.) 126 2e-29
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_19120| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_42318| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_5079| Best HMM Match : fn3 (HMM E-Value=1.3e-35) 29 3.3
SB_8983| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_30739| Best HMM Match : Keratin_B2 (HMM E-Value=0.87) 27 9.9
SB_19076| Best HMM Match : HECT (HMM E-Value=0) 27 9.9
SB_38097| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_48572| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 126 bits (303), Expect = 2e-29
Identities = 53/96 (55%), Positives = 69/96 (71%), Gaps = 1/96 (1%)
Frame = +2
Query: 242 EQQDFEDDANAVLGASDEKNCTYSTGYIKRQAIYACITC-CPEAKDDQNQRAGVCLACSI 418
E + E++ANAV G SD++ CTY GY+ RQA+YAC TC CP ++ AG+CLACS+
Sbjct: 19 EDNELEEEANAVFGDSDDQQCTYEKGYVGRQALYACSTCSCPSSEP-----AGLCLACSL 73
Query: 419 ACHENHDLVELYTKRNFRCDCGNPKFKSHPCQFTPN 526
CH+ H+L ELYTKRNFRCDCGN KF+ C+ P+
Sbjct: 74 TCHDGHELYELYTKRNFRCDCGNSKFEGFNCKLFPH 109
>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3003
Score = 40.7 bits (91), Expect = 0.001
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Frame = +2
Query: 257 EDDANAVLGASDE---KNCTYSTGY--IKRQAIYACITCCPEAKDDQNQRAGVCLACSIA 421
EDD+ D K CT++ Q Y C TC N GVC C+
Sbjct: 54 EDDSGGEESDEDSLSNKLCTFTVTQKEFMNQHWYHCHTC------KMNDGVGVCTVCAKV 107
Query: 422 CHENHDLVELYTK-RNFRCDCG 484
CH++HD+ Y K +F CDCG
Sbjct: 108 CHKDHDVT--YAKYGSFFCDCG 127
>SB_19120| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 918
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 410 CSIACHENHDLVEL-YTKRNFRCDCGNPKFKSHPCQFTPNKTDF 538
C +CH + D + + Y ++ +RC+ SHP P F
Sbjct: 188 CRQSCHSHKDCLSINYKEKEYRCELNAATHLSHPQMLRPEANAF 231
>SB_42318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 474
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +2
Query: 410 CSIACHENHDLVEL-YTKRNFRCDCGNPKFKSHPCQFTPNKTDF 538
C +CH + D + Y ++ +RC+ SHP P F
Sbjct: 50 CRQSCHSHKDCFSINYKEKEYRCELNAATHLSHPQMLRPEANAF 93
>SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 230 MFYNEQQDFEDDANAVLGASDEKNC 304
MF EQQDF D++A +E+NC
Sbjct: 134 MFAQEQQDFASDSSAGSQTEEEENC 158
>SB_5079| Best HMM Match : fn3 (HMM E-Value=1.3e-35)
Length = 978
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 521 PNKTDFNEDNIYNQNFSGLYCICHRPYPDPXATFEDEMIQCV 646
PN D+ DN+Y + +G+ C P P EDEM+ +
Sbjct: 732 PNPNDYEFDNLY-LDMNGIIHPCCHPENKPAPKNEDEMMVAI 772
>SB_8983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 606
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/61 (24%), Positives = 21/61 (34%)
Frame = +2
Query: 410 CSIACHENHDLVELYTKRNFRCDCGNPKFKSHPCQFTPNKTDFNEDNIYNQNFSGLYCIC 589
C C EN K C+ N + KTD D+ YN++ C+
Sbjct: 343 CGAQCLENTQCASYNVKNGVTCELNNETMATQTASL---KTDPKADHYYNEDMEYKSCLD 399
Query: 590 H 592
H
Sbjct: 400 H 400
>SB_30739| Best HMM Match : Keratin_B2 (HMM E-Value=0.87)
Length = 231
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 356 CCP-EAKDDQNQRAGVCLACSIACHEN 433
CC E+ DD N +G+ LA +CHEN
Sbjct: 64 CCDAESSDDGNNESGI-LADDDSCHEN 89
>SB_19076| Best HMM Match : HECT (HMM E-Value=0)
Length = 2018
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/27 (37%), Positives = 11/27 (40%)
Frame = +2
Query: 401 CLACSIACHENHDLVELYTKRNFRCDC 481
C C+ CH HD T CDC
Sbjct: 551 CTECARVCHRGHDCKLKRTSPTAYCDC 577
>SB_38097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1099
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -3
Query: 616 CXWIRIRSMANTVKSTKVLIINIIFIEVSLIWCE 515
C W + NT++ VLI+N I+V W E
Sbjct: 891 CMWGKFGEHVNTIEVNDVLIVNDDLIQVHYRWGE 924
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,834,582
Number of Sequences: 59808
Number of extensions: 422358
Number of successful extensions: 1367
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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