Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_O06
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23860.2 68417.m03431 PHD finger protein-related similar to P...   163   9e-41
At4g23860.1 68417.m03430 PHD finger protein-related similar to P...   163   9e-41
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    42   3e-04
At5g66640.1 68418.m08399 LIM domain-containing protein-related c...    29   2.0  
At3g32270.1 68416.m04114 hypothetical protein similar to putativ...    29   3.5  
At2g45700.1 68415.m05682 sterile alpha motif (SAM) domain-contai...    28   6.1  
At3g19910.1 68416.m02521 zinc finger (C3HC4-type RING finger) fa...    27   8.1  

>At4g23860.2 68417.m03431 PHD finger protein-related similar to Pfam
           profiles PF02207: Putative zinc finger in N-recognin,
           weak hit to PF00628: PHD-finger
          Length = 452

 Score =  163 bits (396), Expect = 9e-41
 Identities = 72/137 (52%), Positives = 92/137 (67%), Gaps = 1/137 (0%)
 Frame = +2

Query: 236 YNEQQDFED-DANAVLGASDEKNCTYSTGYIKRQAIYACITCCPEAKDDQNQRAGVCLAC 412
           Y E+ D E+  A+ VLG  +   CT+  GY+KRQAI++CITC PE        AG+C AC
Sbjct: 19  YIERLDAEELAADLVLGGDEGDECTFPKGYMKRQAIFSCITCTPEGN------AGICTAC 72

Query: 413 SIACHENHDLVELYTKRNFRCDCGNPKFKSHPCQFTPNKTDFNEDNIYNQNFSGLYCICH 592
            ++CH+ H+L+EL+TKRNFRCDCGN KF +  C+  P+K   N +N YN NF GLYC C 
Sbjct: 73  CLSCHDGHELLELWTKRNFRCDCGNSKFGTLACKLLPSKDIENSENSYNHNFKGLYCTCD 132

Query: 593 RPYPDPXATFEDEMIQC 643
           RPYPDP    + EMIQC
Sbjct: 133 RPYPDPNVEEQVEMIQC 149


>At4g23860.1 68417.m03430 PHD finger protein-related similar to Pfam
           profiles PF02207: Putative zinc finger in N-recognin,
           weak hit to PF00628: PHD-finger
          Length = 452

 Score =  163 bits (396), Expect = 9e-41
 Identities = 72/137 (52%), Positives = 92/137 (67%), Gaps = 1/137 (0%)
 Frame = +2

Query: 236 YNEQQDFED-DANAVLGASDEKNCTYSTGYIKRQAIYACITCCPEAKDDQNQRAGVCLAC 412
           Y E+ D E+  A+ VLG  +   CT+  GY+KRQAI++CITC PE        AG+C AC
Sbjct: 19  YIERLDAEELAADLVLGGDEGDECTFPKGYMKRQAIFSCITCTPEGN------AGICTAC 72

Query: 413 SIACHENHDLVELYTKRNFRCDCGNPKFKSHPCQFTPNKTDFNEDNIYNQNFSGLYCICH 592
            ++CH+ H+L+EL+TKRNFRCDCGN KF +  C+  P+K   N +N YN NF GLYC C 
Sbjct: 73  CLSCHDGHELLELWTKRNFRCDCGNSKFGTLACKLLPSKDIENSENSYNHNFKGLYCTCD 132

Query: 593 RPYPDPXATFEDEMIQC 643
           RPYPDP    + EMIQC
Sbjct: 133 RPYPDPNVEEQVEMIQC 149


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
 Frame = +2

Query: 257  EDDANAVLGASDEKNCTYSTG--YIKRQAIYACITCCPEAKDDQNQRAGVCLACSIACHE 430
            E+DAN+    +  K CT+++       Q  Y C TC      D     G C  C+  CH 
Sbjct: 1561 EEDANSERYLAS-KVCTFTSSGSNFMEQHWYFCYTC------DLTVSKGCCSVCAKVCHR 1613

Query: 431  NHDLVELYTKRNFRCDCGNPKFKSHPCQ-FTPNKTDFN 541
             H +V   + R F CDCG    +   CQ   P K + N
Sbjct: 1614 GHRVVYSRSSR-FFCDCGAGGVRGSSCQCLKPRKYNGN 1650


>At5g66640.1 68418.m08399 LIM domain-containing protein-related
           contains low similarity to Pfam profile PF00412: LIM
           domain
          Length = 450

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/51 (27%), Positives = 20/51 (39%)
 Frame = +2

Query: 401 CLACSIACHENHDLVELYTKRNFRCDCGNPKFKSHPCQFTPNKTDFNEDNI 553
           CL C   CH    + E+  K  F  DC    +++  C     K   N + I
Sbjct: 96  CLCC-FHCHRPFVMHEILKKGKFHIDCYKEYYRNRNCYVCQQKIPVNAEGI 145


>At3g32270.1 68416.m04114 hypothetical protein similar to putative
           replication protein A1 GB:AAC95163 GI:4006821 from
           [Arabidopsis thaliana]
          Length = 209

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +3

Query: 441 WSSYIQKGTSVVIV---VTQNLNPTRVNSHQIRLTSMKIIFIIKT 566
           ++ +I  G  + I+   V  NLNP RV SH+ ++   K   + KT
Sbjct: 62  YNKFIDAGDWITIMRFGVYPNLNPVRVTSHKFKICFFKDTVVRKT 106


>At2g45700.1 68415.m05682 sterile alpha motif (SAM)
           domain-containing protein similar to SNM1 protein [Mus
           musculus] GI:7595835; contains Pfam profile PF00536: SAM
           domain (Sterile alpha motif)
          Length = 723

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 265 RKCCSWSLRREELHLFYGLHKTSSHLRLHYML 360
           R CC W L    L  + GL K+ SH +++  L
Sbjct: 413 RDCCHWFLTHFHLDHYQGLTKSFSHGKIYCSL 444


>At3g19910.1 68416.m02521 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 340

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 374 DDQNQRAGVCLACSIACHENHDLVELYTKRNFRCDCGN 487
           D+QN     C+ C +   ++ DL+ L  K ++  +C N
Sbjct: 279 DNQNGTNESCVICRLDYEDDEDLILLPCKHSYHSECIN 316


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,829,777
Number of Sequences: 28952
Number of extensions: 294737
Number of successful extensions: 809
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)