Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_O04
         (654 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    23   1.7  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          23   1.7  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.2  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   5.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   5.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   5.1  

>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 262 SNIVAWEPACSFTQSAFPPSSXFLLRD 182
           SN  A   AC F  + FP SS  +++D
Sbjct: 167 SNNSASPKACQFLYNQFPGSSQVVVKD 193


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 262 SNIVAWEPACSFTQSAFPPSSXFLLRD 182
           SN  A   AC F  + FP SS  +++D
Sbjct: 187 SNNSASPKACQFLYNQFPGSSQVVVKD 213


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 379 CXNAGSCHQLLTS 417
           C N G+CH L+ S
Sbjct: 231 CQNGGTCHDLVNS 243


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 277 CIFIFSNIVAWEPA 236
           C F FS+ V W PA
Sbjct: 77  CRFKFSSSVGWSPA 90


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 395  LVTNFLHPLEKSEMLTKDEFKQL 463
            L+  +LHP+E  +     E K L
Sbjct: 1199 LIEQYLHPIEDDKKKVSAELKDL 1221


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 395  LVTNFLHPLEKSEMLTKDEFKQL 463
            L+  +LHP+E  +     E K L
Sbjct: 1199 LIEQYLHPIEDDKKKVSAELKDL 1221


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,650
Number of Sequences: 336
Number of extensions: 3170
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)