Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_O04
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   3.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   4.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   7.9  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 256 IVAWEPACSFTQSAFPPSSXFLLRD 182
           +V  +P C+     FPP   F +RD
Sbjct: 404 LVPSKPMCAEAFQEFPPLGRFAVRD 428


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 83  QNFSTICSFSYLVHXNYI 30
           + F T CSF YL   N I
Sbjct: 191 EGFLTSCSFDYLTDTNEI 208


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 84  VKCQQKIAWLRQYTLLKV 137
           + C  K++W   Y+ LKV
Sbjct: 244 ITCPIKVSWRGNYSCLKV 261


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 84  VKCQQKIAWLRQYTLLKV 137
           + C  K++W   Y+ LKV
Sbjct: 295 ITCPIKVSWRGNYSCLKV 312


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 84  VKCQQKIAWLRQYTLLKV 137
           + C  K++W   Y+ LKV
Sbjct: 244 ITCPIKVSWRGNYSCLKV 261


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,167
Number of Sequences: 438
Number of extensions: 3866
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)