Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_O04
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34430.4 68417.m04893 DNA-binding family protein contains Pfa...    29   2.0  
At4g34430.3 68417.m04892 DNA-binding family protein contains Pfa...    29   2.0  
At4g34430.2 68417.m04891 DNA-binding family protein contains Pfa...    29   2.0  
At4g34430.1 68417.m04890 DNA-binding family protein contains Pfa...    29   2.0  
At1g52410.2 68414.m05915 caldesmon-related weak similarity to Ca...    29   2.0  
At1g52410.1 68414.m05914 caldesmon-related weak similarity to Ca...    29   2.0  
At4g37235.1 68417.m05271 expressed protein                             29   2.7  
At2g04440.1 68415.m00448 NUDIX/mutT hydrolase family protein sim...    27   8.2  

>At4g34430.4 68417.m04893 DNA-binding family protein contains Pfam
           domains PF04433: SWIRM domain, PF00249: Myb-like
           DNA-binding domain and PF00569: Zinc finger, ZZ type
          Length = 986

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 260 TEYKDASGSVTTSPIRAVSEIQAFRNVVLKDIIXSEK 370
           +E KDAS S  +      S+ +A R+V +KD + SEK
Sbjct: 720 SENKDASQSTVSQSAADASQPEASRDVEMKDTLQSEK 756


>At4g34430.3 68417.m04892 DNA-binding family protein contains Pfam
           domains PF04433: SWIRM domain, PF00249: Myb-like
           DNA-binding domain and PF00569: Zinc finger, ZZ type
          Length = 983

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 260 TEYKDASGSVTTSPIRAVSEIQAFRNVVLKDIIXSEK 370
           +E KDAS S  +      S+ +A R+V +KD + SEK
Sbjct: 718 SENKDASQSTVSQSAADASQPEASRDVEMKDTLQSEK 754


>At4g34430.2 68417.m04891 DNA-binding family protein contains Pfam
           domains PF04433: SWIRM domain, PF00249: Myb-like
           DNA-binding domain and PF00569: Zinc finger, ZZ type
          Length = 985

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 260 TEYKDASGSVTTSPIRAVSEIQAFRNVVLKDIIXSEK 370
           +E KDAS S  +      S+ +A R+V +KD + SEK
Sbjct: 720 SENKDASQSTVSQSAADASQPEASRDVEMKDTLQSEK 756


>At4g34430.1 68417.m04890 DNA-binding family protein contains Pfam
           domains PF04433: SWIRM domain, PF00249: Myb-like
           DNA-binding domain and PF00569: Zinc finger, ZZ type
          Length = 985

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 260 TEYKDASGSVTTSPIRAVSEIQAFRNVVLKDIIXSEK 370
           +E KDAS S  +      S+ +A R+V +KD + SEK
Sbjct: 720 SENKDASQSTVSQSAADASQPEASRDVEMKDTLQSEK 756


>At1g52410.2 68414.m05915 caldesmon-related weak similarity to
           Caldesmon (CDM) (Swiss-Prot:P12957) [Gallus gallus]
          Length = 759

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/35 (28%), Positives = 24/35 (68%)
 Frame = +2

Query: 287 VTTSPIRAVSEIQAFRNVVLKDIIXSEKAHVAXMQ 391
           ++++PI  +S +  +RNV+ + +  SE+ H+A ++
Sbjct: 612 LSSAPISYISRLAKYRNVIKEGLEASERVHIAQVR 646


>At1g52410.1 68414.m05914 caldesmon-related weak similarity to
           Caldesmon (CDM) (Swiss-Prot:P12957) [Gallus gallus]
          Length = 755

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/35 (28%), Positives = 24/35 (68%)
 Frame = +2

Query: 287 VTTSPIRAVSEIQAFRNVVLKDIIXSEKAHVAXMQ 391
           ++++PI  +S +  +RNV+ + +  SE+ H+A ++
Sbjct: 608 LSSAPISYISRLAKYRNVIKEGLEASERVHIAQVR 642


>At4g37235.1 68417.m05271 expressed protein
          Length = 152

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = -1

Query: 480 SFILPVNCLNSSLVSISLFSRGCKKLVTRPCIXATWAFSEXIMSFSTTFRNACI 319
           SF+      +++ V++ L   G +K   R  + AT AF    +SF++TF N C+
Sbjct: 93  SFLSLGGACSTASVAVLLMDAG-EKQCDRYKLSATMAFLSSFLSFASTFFNFCL 145


>At2g04440.1 68415.m00448 NUDIX/mutT hydrolase family protein
           similar to SP|P53370 Nucleoside diphosphate-linked
           moiety X motif 6 {Homo sapiens}; contains Pfam profile
           PF00293: NUDIX domain
          Length = 215

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = +3

Query: 117 QYTLLKVKTMMNYVSKKAILLLSRKRXKEDGGKALWVKLQAGSQATMLLNIKMHQVQ*QH 296
           +  L++V+ M N     A L +S K  K+ G K +W+KL    + + L++I M +    H
Sbjct: 22  EVNLMEVEPM-NAEDFNAKLDVSFKAWKDQGKKGIWIKLPC--ELSSLVDIAMKKGFTYH 78

Query: 297 H 299
           H
Sbjct: 79  H 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,316,861
Number of Sequences: 28952
Number of extensions: 242743
Number of successful extensions: 520
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)