Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_N22
         (461 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)                     29   2.5  
SB_36932| Best HMM Match : HTH_8 (HMM E-Value=1.4)                     28   3.3  
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)                     27   7.6  
SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)                  27   10.0 
SB_15093| Best HMM Match : Rho_N (HMM E-Value=8.1e-05)                 27   10.0 

>SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)
          Length = 2440

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 115 KRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKK 234
           KRDAP  DN       S KK    L   +E+  +P +  K
Sbjct: 780 KRDAPLRDNDEQFRTYSRKKQHASLESSIEAPCSPRSASK 819


>SB_36932| Best HMM Match : HTH_8 (HMM E-Value=1.4)
          Length = 721

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 115 KRDAPKEDNSLNTLAESAKKTIEELREKVE 204
           KR APK+ N+ + L    +K  EELR++ +
Sbjct: 62  KRQAPKDRNTASVLRAKIRKQEEELRKETQ 91


>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4538

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 393  ENFYSIMSRTLLHSIYLGL 337
            E  +SIMS  LLH ++LGL
Sbjct: 3818 EEMFSIMSSVLLHLVFLGL 3836


>SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)
          Length = 2155

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 112 VKRDAPKEDNSLNTLAESAKKTIEELREKVESAL 213
           ++R   ++DN L ++ E  K T EEL+  +E  +
Sbjct: 172 LQRQLSQKDNQLQSMKEDVKNTEEELKLDLEKVI 205


>SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)
          Length = 166

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 15/62 (24%), Positives = 23/62 (37%)
 Frame = +1

Query: 103 HAFVKRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNL 282
           H     D  K +       E  KK + ++RE+  S L P    +       SF   +  +
Sbjct: 80  HGLASHDKKKRERPSLVARERMKKRLRKIREEFGSELLPIVYVREIVLAYISFCRLFMYV 139

Query: 283 KP 288
           KP
Sbjct: 140 KP 141


>SB_15093| Best HMM Match : Rho_N (HMM E-Value=8.1e-05)
          Length = 315

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 148 NTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNE 267
           N  A S KK + +  + + S   PE +KK     VDS  E
Sbjct: 81  NRAANSVKKELNKFADWILS-FVPEPIKKTVNKQVDSLKE 119


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,155,020
Number of Sequences: 59808
Number of extensions: 198139
Number of successful extensions: 558
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)