Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_N22
(461 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07777.1 68415.m00893 expressed protein 30 0.66
At3g28180.1 68416.m03521 glycosyl transferase family 2 protein s... 29 2.0
At1g73090.1 68414.m08451 expressed protein 28 2.7
At3g21510.1 68416.m02714 two-component phosphorelay mediator 3 (... 28 3.5
At3g20460.1 68416.m02590 sugar transporter, putative similar to ... 28 3.5
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos... 27 4.7
At3g57060.1 68416.m06353 non-SMC condensin subunit, XCAP-D2/Cnd1... 27 4.7
At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S ... 27 4.7
At5g58720.1 68418.m07356 PRLI-interacting factor, putative simil... 27 6.2
At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel... 27 6.2
At1g21240.1 68414.m02654 wall-associated kinase, putative simila... 27 6.2
At4g29920.1 68417.m04257 heat shock protein-related contains sim... 27 8.2
At1g67490.1 68414.m07686 alpha-glucosidase I (GCS1) / KNOPF (KNF... 27 8.2
>At2g07777.1 68415.m00893 expressed protein
Length = 262
Score = 30.3 bits (65), Expect = 0.66
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -1
Query: 257 LSTIVPKFFLTVSGAKADSTFSLNSSIVFFALSASVFRLLSSLGASRLTNACTLA 93
LS+ V FF G+++ S F+L ++ S +FR L R+T C LA
Sbjct: 11 LSSSVAGFFGRFLGSESVSRFNLIIFLILLVFSICLFRSLKQYLGKRMTQWCYLA 65
>At3g28180.1 68416.m03521 glycosyl transferase family 2 protein
similar to beta-(1-3)-glucosyl transferase GB:AAC62210
GI:3687658 from [Bradyrhizobium japonicum], cellulose
synthase from Agrobacterium tumeficiens [gi:710492] and
Agrobacterium radiobacter [gi:710493]; contains Pfam
glycosyl transferase, group 2 family protein domain
PF00535
Length = 673
Score = 28.7 bits (61), Expect = 2.0
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +1
Query: 124 APKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNL 282
A KE+ +ES + + +L+E+ + + ETVKK+ G ++ N+ N+
Sbjct: 570 AEKEEKLHRRNSESGLELLSKLKEQETNLVGQETVKKSLGGLMRPKNKKKTNM 622
>At1g73090.1 68414.m08451 expressed protein
Length = 306
Score = 28.3 bits (60), Expect = 2.7
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 210 LGPGDC*EKLWHDGRQLQRI 269
+GPG C + W +GR+LQ++
Sbjct: 272 IGPGVCVGQAWQEGRELQQV 291
>At3g21510.1 68416.m02714 two-component phosphorelay mediator 3
(HP3) identical to ATHP3 [Arabidopsis thaliana]
GI:4156245
Length = 154
Score = 27.9 bits (59), Expect = 3.5
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = -1
Query: 257 LSTIVPKFFLTVSGAKADSTFSLNSSIVFFA-LSASVFRLL---SSLGASRLTNACTLAR 90
+S +V FF D + SL+ +V F + V +L SS+GA R+ NAC + R
Sbjct: 42 VSQVVTLFFQDSDRILNDLSLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFR 101
Query: 89 QIANK 75
+
Sbjct: 102 SFCEQ 106
>At3g20460.1 68416.m02590 sugar transporter, putative similar to
ERD6 protein [Arabidopsis thaliana] GI:3123712,
sugar-porter family proteins 1 and 2 [Arabidopsis
thaliana] GI:14585699, GI:14585701; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 488
Score = 27.9 bits (59), Expect = 3.5
Identities = 22/78 (28%), Positives = 36/78 (46%)
Frame = -1
Query: 254 STIVPKFFLTVSGAKADSTFSLNSSIVFFALSASVFRLLSSLGASRLTNACTLARQIANK 75
S +VP + + ++ K TFS +S+V A A + L S + +L T+ +
Sbjct: 161 SYVVPVYIVEIAPKKVRGTFSAINSLVMCASVAVTYLLGSVISWQKLALISTV--PCVFE 218
Query: 74 IISSLFILDSLRTSSRIG 21
+ FI +S R SR G
Sbjct: 219 FVGLFFIPESPRWLSRNG 236
>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
identical to CIP1 (GI:836950) [Arabidopsis thaliana]
Length = 1305
Score = 27.5 bits (58), Expect = 4.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 100 VHAFVKRDAPKEDNSLNTLAESAKKTIEELREKVESA 210
VH KRD+ + L ESA++ ++EL + + S+
Sbjct: 563 VHEAHKRDSSSQVKELEARVESAEEQVKELNQNLNSS 599
>At3g57060.1 68416.m06353 non-SMC condensin subunit, XCAP-D2/Cnd1
family protein similar to 13S condensin XCAP-D2 subunit
[Xenopus laevis] GI:3764087; contains Pfam profile
PF04594: Non-SMC condensin subunit, XCAP-D2/Cnd1
Length = 1439
Score = 27.5 bits (58), Expect = 4.7
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 142 SLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYK 276
SL T E K + E + E ALA + V +NF ++++ +F K
Sbjct: 1171 SLLTFTEKGIKKLIESFKSYEHALAEDLVTENFRSIINKGKKFAK 1215
>At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S
ribosomal protein L24, Arabidopsis thaliana,
EMBL:AC006282
Length = 163
Score = 27.5 bits (58), Expect = 4.7
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 118 RDAPKEDNSLNTLAESAKKTIEELR-EKVESALAPETVKKNF 240
RDA +E +L + E KKT +E + +KVE A + VK NF
Sbjct: 104 RDAAREA-ALREIKERIKKTKDEKKAKKVEFASKQQKVKANF 144
>At5g58720.1 68418.m07356 PRLI-interacting factor, putative similar
to PRLI-interacting factor N [Arabidopsis thaliana]
GI:11139276; contains Pfam profile PF01713: Smr domain
Length = 519
Score = 27.1 bits (57), Expect = 6.2
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +1
Query: 115 KRDAPKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNLKPAE 294
KR + + T ++ KK +EE R+ E E V KNF ++S E + ++ E
Sbjct: 12 KRSCAAKPSGDGTTSDGNKKDVEEERKDGEGKREIENVGKNF---IESLMEAFCSVSMEE 68
Query: 295 APKA 306
A A
Sbjct: 69 AMAA 72
>At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel,
putative (CNGC16) similar to cyclic nucleotide and
calmodulin-regulated ion channel (cngc6) GI:4581207 from
[Arabidopsis thaliana]
Length = 705
Score = 27.1 bits (57), Expect = 6.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 99 IGEADSQQDNQQLVHFG*FENVFTNRLQESP 7
+ D++ D+ Q FG F + FTN + SP
Sbjct: 291 LSNCDARNDDDQHFQFGMFGDAFTNDVTSSP 321
>At1g21240.1 68414.m02654 wall-associated kinase, putative similar
to wall-associated kinase 1 [Arabidopsis thaliana]
GI:3549626; expressed in leaves and stems & induced by
salicylic acid or INA (PMID:10380805)
Length = 741
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 227 TVSGAKADSTFSLNSSIVFFALSASVFRLLSSLGASRLTNAC 102
T G + S+FSL+S+ F + + LLS+ G + C
Sbjct: 105 TALGYQLGSSFSLSSNNKFTLVGCNALSLLSTFGKQNYSTGC 146
>At4g29920.1 68417.m04257 heat shock protein-related contains
similarity to heat shock protein 101 [Triticum aestivum]
gi|6013196|gb|AAF01280
Length = 1017
Score = 26.6 bits (56), Expect = 8.2
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -1
Query: 155 SVFRLLSSLGASRLTNACTLARQIANKIISSLFILDSLRTSSR 27
+V + L+ AS L + TLAR+ + ++ L + +L TSSR
Sbjct: 7 TVHQTLTPEAASVLKQSLTLARRRGHSQVTPLHVASTLLTSSR 49
>At1g67490.1 68414.m07686 alpha-glucosidase I (GCS1) / KNOPF (KNF)
identical to alpha-glucosidase I (GI:16506680,
GI:13398928) [Arabidopsis thaliana]
Length = 852
Score = 26.6 bits (56), Expect = 8.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 71 LSCWLSASPMCMHSSNEMLLKK 136
L CW+ + CMHS E+L K+
Sbjct: 603 LRCWMYLAADCMHSITELLGKE 624
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,922,733
Number of Sequences: 28952
Number of extensions: 144091
Number of successful extensions: 479
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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