Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_N21
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 117 1e-27
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 113 2e-26
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 110 1e-25
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 39 4e-04
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 39 4e-04
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 39 6e-04
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 31 0.11
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.34
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 28 1.0
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 27 1.4
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 27 2.4
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 3.2
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 3.2
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 26 4.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.6
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 5.6
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.6
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 25 7.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.7
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 117 bits (282), Expect = 1e-27
Identities = 56/112 (50%), Positives = 78/112 (69%)
Frame = +2
Query: 116 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 295
M+Y+AAYLL +GGK +P+A+D+E +LS+VGIEA++E+++ +I ELNGKD+++LIAAG E
Sbjct: 1 MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNE 60
Query: 296 KLSSMPVGGGXXXXXXXXXXXXXXXEEXKEDXKXXXKEXSESDDDMGFGLFD 451
KL+++P GG E E K KE ESD+DMGFGLFD
Sbjct: 61 KLATVPTGGAASAAPAAAAGGAAPAAE--EAAKEEAKEEEESDEDMGFGLFD 110
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 113 bits (271), Expect = 2e-26
Identities = 54/112 (48%), Positives = 78/112 (69%)
Frame = +2
Query: 116 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 295
M+Y+AAYLL +GGK +P+A+D+E +LS+VGIE+++E+++ +I EL+GKD+++LIAAG E
Sbjct: 1 MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNE 60
Query: 296 KLSSMPVGGGXXXXXXXXXXXXXXXEEXKEDXKXXXKEXSESDDDMGFGLFD 451
KL+++P GG E E K KE ESD+DMGFGLFD
Sbjct: 61 KLATVPSGGAAAAAAPAAAGGAAPAAE--EAAKEEAKEEEESDEDMGFGLFD 110
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 110 bits (265), Expect = 1e-25
Identities = 54/112 (48%), Positives = 77/112 (68%)
Frame = +2
Query: 116 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 295
M+Y+AAYLL +GGK +P+A+D+E +LS+VGIEA+AE+++ +I+ELNGK++E+LIAAG E
Sbjct: 1 MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNE 60
Query: 296 KLSSMPVGGGXXXXXXXXXXXXXXXEEXKEDXKXXXKEXSESDDDMGFGLFD 451
KLS++P G +E + E ESD+DMGFGLFD
Sbjct: 61 KLSTVPSAGAVATPAAGGAAGAEATSAAEEAKEEEAAE--ESDEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 39.1 bits (87), Expect = 4e-04
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +2
Query: 251 LNGKDVEQLIA-AGREKLSSMPVGGGXXXXXXXXXXXXXXXEEXKEDXKXXXKEXSESDD 427
L GKD+++L+ G +S P G E +E+ K KE ESD+
Sbjct: 50 LEGKDLKELLLNIGSAGAASAPTAAGAGAAAPA--------EAAEEEKKEEAKEEEESDE 101
Query: 428 DMGFGLFD 451
DMGFGLFD
Sbjct: 102 DMGFGLFD 109
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 39.1 bits (87), Expect = 4e-04
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Frame = +2
Query: 185 EKILS-SVGIEADAEKLKKVI--TELNGKDVEQLIAAGREKLSSMPVGGGXXXXXXXXXX 355
+K+LS + D E + I L GKD+++L+ + PV GG
Sbjct: 25 DKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSGAGAAPVAGGAAAPAAADG- 83
Query: 356 XXXXXEEXKEDXKXXXKEXSESDDDMGFGLFD 451
E + K KE ESD+DMGFGLFD
Sbjct: 84 ------EAPAEEKEEAKEEEESDEDMGFGLFD 109
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 38.7 bits (86), Expect = 6e-04
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = +2
Query: 185 EKILS-SVGIEADAEKLKKVI--TELNGKDVEQLIAAGREKLSSMPVGGGXXXXXXXXXX 355
+K+LS + D E + I L GKD+++L+ ++ P GG
Sbjct: 25 DKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL-NIGSAAAAPAAGGAGAPAAAAGG 83
Query: 356 XXXXXEEXKEDXKXXXKEXSESDDDMGFGLFD 451
E E+ K KE ESD+DMGFGLFD
Sbjct: 84 -----EAAAEEQKEEAKEEEESDEDMGFGLFD 110
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 31.1 bits (67), Expect = 0.11
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +2
Query: 404 KEXSESDDDMGFGLFD 451
+E ESD+DMGFGLFD
Sbjct: 297 EEEEESDEDMGFGLFD 312
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 29.5 bits (63), Expect = 0.34
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Frame = -2
Query: 252 SSVITFLSFSASASIP--TELRIFSTSAAAGVVLPPSTASKYAAT 124
SSV T LS SAS+SIP + STS ++ V+P S++S +++
Sbjct: 8 SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSS 52
Score = 27.1 bits (57), Expect = 1.8
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = -2
Query: 300 SFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKYA 130
SF+ PA+ S TSL SS S SAS + + + S+S+A+ P S++S +A
Sbjct: 70 SFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSAS----PTSSSSSHA 122
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 27.9 bits (59), Expect = 1.0
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 267 TSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKY 133
+ L + S T +S S+ S+PT+ + T + + V PPS S Y
Sbjct: 526 SKLSVESDETAVSASSGESVPTDSTLTDTKSKSVFVHPPSPQSLY 570
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 27.5 bits (58), Expect = 1.4
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = -2
Query: 300 SFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTA 142
SF P+A + S P+SS+ +F + SA+++ P+ + S A P +T+
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATS 503
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 26.6 bits (56), Expect = 2.4
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2
Query: 282 AISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTAS 139
++S S+ L S++ T S +AS+PT I S S P+T+S
Sbjct: 79 SLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSS 126
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 182 VEKILSSVGIEADAEKLKKVITELNG 259
V++I VG+E D+E K + E+ G
Sbjct: 1742 VDEIFGEVGVEKDSEDYKSNVKEIKG 1767
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 3.2
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -2
Query: 267 TSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKYAAT 124
T LP ++V T SFS SAS T +++ +V PPST+ T
Sbjct: 37 TPLPSANVTT-TSFS-SASTETSTHSVTSTNITSIVPPPSTSHNSTTT 82
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 4.2
Identities = 6/15 (40%), Positives = 12/15 (80%)
Frame = +3
Query: 111 KKCVTWPRIYWLCWV 155
+K +W RI+W+C++
Sbjct: 299 EKAESWKRIFWMCYI 313
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 5.6
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = -2
Query: 318 PTGIDDSFSRPAAISCSTSLPLSS---VITFLSFSASASIPTELRIFSTSAAAGVVLPPS 148
PT S+ +++ S+S P SS +T S S S+ T STS++ S
Sbjct: 202 PTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSS 261
Query: 147 TASKYAAT 124
TAS +++
Sbjct: 262 TASSSSSS 269
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 5.6
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = -2
Query: 324 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLS----FSASASIPTELRIFSTSAAAGVVL 157
PPP SFS I+ ++ +P SS T + ++ S+ +P+ + I S S ++ VL
Sbjct: 190 PPPASSTSSFS---TITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSV-ISSASLSSSSVL 245
Query: 156 PPS 148
P S
Sbjct: 246 PTS 248
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3
Query: 450 TKLYKSTRRWSLFQFMF 500
TKL K TRR SLF+F F
Sbjct: 317 TKLMKYTRRKSLFRFPF 333
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 25.0 bits (52), Expect = 7.3
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = -2
Query: 294 SRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTAS 139
S P+A+S +TS+P S+ + +S S S S T L S+S + V+ +T S
Sbjct: 139 SSPSAVSSTTSIP--SISSTISSSVSTSSFTSL---SSSGFSTVLSSTNTTS 185
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.6 bits (51), Expect = 9.7
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Frame = -2
Query: 321 PPTGIDDSFSRPAA------ISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVV 160
PPTG S S P + STS+P+ T + + S+ +PT STS
Sbjct: 179 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTT----STSCTTSTS 234
Query: 159 LPPSTAS 139
+P +S
Sbjct: 235 IPTGGSS 241
Score = 24.6 bits (51), Expect = 9.7
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -2
Query: 288 PAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKYAAT 124
P + STS+P+ T + + S+ +PT STS +PP+ S T
Sbjct: 252 PPTSTSSTSIPIPPTSTSSTDTNSSPLPTT----STSCTTSTSIPPTGNSTTPVT 302
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,665,400
Number of Sequences: 5004
Number of extensions: 25349
Number of successful extensions: 116
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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