Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_N21
(550 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B) 98 3e-21
At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B) 98 3e-21
At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B) 98 3e-21
At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A) 95 4e-20
At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)... 94 6e-20
At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)... 94 6e-20
At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)... 79 3e-15
At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)... 75 4e-14
At3g63200.1 68416.m07100 patatin-related low similarity to patat... 31 0.51
At1g67140.1 68414.m07638 expressed protein 30 1.2
At1g71060.1 68414.m08201 pentatricopeptide (PPR) repeat-containi... 29 2.7
At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)... 28 3.6
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)... 28 3.6
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C) 27 6.2
At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)... 27 6.2
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)... 27 6.2
At4g31210.1 68417.m04432 DNA topoisomerase family protein simila... 27 8.3
At4g29880.1 68417.m04252 leucine-rich repeat family protein cont... 27 8.3
At3g30560.1 68416.m03867 hypothetical protein 27 8.3
>At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 98.3 bits (234), Expect = 3e-21
Identities = 54/117 (46%), Positives = 73/117 (62%), Gaps = 5/117 (4%)
Frame = +2
Query: 116 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 295
M+ VAAYLLAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60
Query: 296 KLSSMPVGGG-----XXXXXXXXXXXXXXXEEXKEDXKXXXKEXSESDDDMGFGLFD 451
KL+S+P GGG E K++ K KE ESDDDMGF LF+
Sbjct: 61 KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKE--ESDDDMGFSLFE 115
>At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 98.3 bits (234), Expect = 3e-21
Identities = 54/117 (46%), Positives = 73/117 (62%), Gaps = 5/117 (4%)
Frame = +2
Query: 116 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 295
M+ VAAYLLAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60
Query: 296 KLSSMPVGGG-----XXXXXXXXXXXXXXXEEXKEDXKXXXKEXSESDDDMGFGLFD 451
KL+S+P GGG E K++ K KE ESDDDMGF LF+
Sbjct: 61 KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKE--ESDDDMGFSLFE 115
>At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 98.3 bits (234), Expect = 3e-21
Identities = 54/117 (46%), Positives = 73/117 (62%), Gaps = 5/117 (4%)
Frame = +2
Query: 116 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 295
M+ VAAYLLAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60
Query: 296 KLSSMPVGGG-----XXXXXXXXXXXXXXXEEXKEDXKXXXKEXSESDDDMGFGLFD 451
KL+S+P GGG E K++ K KE ESDDDMGF LF+
Sbjct: 61 KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKE--ESDDDMGFSLFE 115
>At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)
Length = 115
Score = 94.7 bits (225), Expect = 4e-20
Identities = 52/117 (44%), Positives = 71/117 (60%), Gaps = 5/117 (4%)
Frame = +2
Query: 116 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 295
M+ VAA+LLAVL GK +P D++ IL SVG E + +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1 MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60
Query: 296 KLSSMPVGGG-----XXXXXXXXXXXXXXXEEXKEDXKXXXKEXSESDDDMGFGLFD 451
KL+S+P GGG E K++ K KE ESDDDMGF LF+
Sbjct: 61 KLASVPSGGGGGVAVASATSGGGGGGGAPAAESKKEEKKEEKE--ESDDDMGFSLFE 115
>At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 93.9 bits (223), Expect = 6e-20
Identities = 46/112 (41%), Positives = 69/112 (61%)
Frame = +2
Query: 116 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 295
M+ AA+LLAVLGG P+A +++ I+ +VG + D E ++ ++ E++GKD+ +LIA+GRE
Sbjct: 1 MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60
Query: 296 KLSSMPVGGGXXXXXXXXXXXXXXXEEXKEDXKXXXKEXSESDDDMGFGLFD 451
KL+S+P GGG E + +E ESDDDMGF LF+
Sbjct: 61 KLASVPSGGG-VAVSAAPSSGGGGAAAPAEKKEAKKEEKEESDDDMGFSLFE 111
>At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 93.9 bits (223), Expect = 6e-20
Identities = 46/112 (41%), Positives = 69/112 (61%)
Frame = +2
Query: 116 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 295
M+ AA+LLAVLGG P+A +++ I+ +VG + D E ++ ++ E++GKD+ +LIA+GRE
Sbjct: 1 MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60
Query: 296 KLSSMPVGGGXXXXXXXXXXXXXXXEEXKEDXKXXXKEXSESDDDMGFGLFD 451
KL+S+P GGG E + +E ESDDDMGF LF+
Sbjct: 61 KLASVPSGGG-VAVSAAPSSGGGGAAAPAEKKEAKKEEKEESDDDMGFSLFE 111
>At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)
acidic ribosomal protein P2, Parthenium
argentatum,SWISSPROT:RLA2_PARAR
Length = 114
Score = 78.6 bits (185), Expect = 3e-15
Identities = 45/114 (39%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Frame = +2
Query: 116 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 295
M+ VAAYLLA L G P+ AD++KI+ SVG E D EK+ + + +DV +LIA GRE
Sbjct: 1 MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGRE 60
Query: 296 KLSSMPVGGGXXXXXXXXXXXXXXXEEXKE-DXKXXXKEXSESDDDMG-FGLFD 451
K++++ GGG E + K +E ES+DD G LFD
Sbjct: 61 KMAALSSGGGAVAVASGGGGGAAPAAEPASVESKKKEEEKEESEDDGGMMSLFD 114
>At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)
similar to acidic ribosomal protein P2b (rpp2b)
GB:U62753 GI:2431770 from [Zea mays]
Length = 115
Score = 74.5 bits (175), Expect = 4e-14
Identities = 45/115 (39%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Frame = +2
Query: 116 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 295
M+ +AA+LLA LGG P + D++KIL SVG E D K+ + + + DV +LIAAGRE
Sbjct: 1 MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGRE 60
Query: 296 KLSSMPVGGG--XXXXXXXXXXXXXXXEEXKEDXKXXXKEXSESDDDMG-FGLFD 451
K+S++ GG E E K + ES DD G GLFD
Sbjct: 61 KMSALSSGGPAVAMVAGGGGGGAASAAEPVAESKKKVEEVKDESSDDAGMMGLFD 115
>At3g63200.1 68416.m07100 patatin-related low similarity to
patatin-like latex protein allergen Hev b 7 - Hevea
brasiliensis, EMBL:AF113546; contains patatin domain
PF01734
Length = 384
Score = 31.1 bits (67), Expect = 0.51
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = +2
Query: 185 EKILSSVGIEADAEKLKKVITELNGKDVE----QLIAAGREKLSSMP 313
E++L G+E +K+++TE NG+ +E +L+A+G+ L P
Sbjct: 325 EELLKERGVETAPFGVKRILTESNGERIEGFVQRLVASGKSSLPPSP 371
>At1g67140.1 68414.m07638 expressed protein
Length = 2158
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -1
Query: 301 QLLTSGRNKLFNILAVELSDYFLKLLSVSFDTDGAEDLLNVS 176
Q L++GR L+++L L++LS SF D + D+L VS
Sbjct: 1403 QSLSAGRFFSSGFLSIDLCQELLQVLSYSFHMDSSWDILAVS 1444
>At1g71060.1 68414.m08201 pentatricopeptide (PPR) repeat-containing
protein low similarity to CRP1 [Zea mays] GI:3289002;
contains Pfam profile PF01535: PPR repeat
Length = 510
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 173 AADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLS 304
A+ VE +S+ DAE++ K++T+ VE L+ KLS
Sbjct: 50 ASSVETQVSANDASQDAERICKILTKFTDSKVETLLNEASVKLS 93
>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 380 KEDXKXXXKEXSESDDDMGFGLFD 451
KE+ K E ESD D+GFGLFD
Sbjct: 92 KEEKKDEPAE--ESDGDLGFGLFD 113
>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 380 KEDXKXXXKEXSESDDDMGFGLFD 451
KE+ K E ESD D+GFGLFD
Sbjct: 92 KEEKKDEPAE--ESDGDLGFGLFD 113
>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
Length = 113
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 386 DXKXXXKEXSESDDDMGFGLFD 451
+ K + ESD D+GFGLFD
Sbjct: 92 EEKKKDEPAEESDGDLGFGLFD 113
>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 386 DXKXXXKEXSESDDDMGFGLFD 451
+ K + ESD D+GFGLFD
Sbjct: 91 EEKKKDEPAEESDGDLGFGLFD 112
>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 386 DXKXXXKEXSESDDDMGFGLFD 451
+ K + ESD D+GFGLFD
Sbjct: 91 EEKKKDEPAEESDGDLGFGLFD 112
>At4g31210.1 68417.m04432 DNA topoisomerase family protein similar to
DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis}
Length = 1280
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = -1
Query: 250 LSDYFLKLLSVSFDTDGAEDLLNVSG---SWRGL 158
L+ YF ++ SF D +L NVSG W+GL
Sbjct: 1006 LTHYFTEITDYSFTADMETELDNVSGGVTEWKGL 1039
>At4g29880.1 68417.m04252 leucine-rich repeat family protein
contains leucine rich repeats, Pfam:PF00560
Length = 404
Score = 27.1 bits (57), Expect = 8.3
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = -1
Query: 310 H*RQLLTSGRNKLFNILAVELSDYFLKLLSVSFDTDGAEDLLNVSGSWRGLATQHSQ*IR 131
H +++ S +L N++A+++ +K L S +LNVSG++ Q Q R
Sbjct: 87 HIKKIPESLTARLLNLIALDIHSNQIKALPNSIGCLSKLKILNVSGNFLVSLPQTIQNCR 146
Query: 130 GHVTHFLSPN 101
H + PN
Sbjct: 147 FHTSTKSGPN 156
>At3g30560.1 68416.m03867 hypothetical protein
Length = 1473
Score = 27.1 bits (57), Expect = 8.3
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Frame = -1
Query: 304 RQLLTSGRNKLFNILAVELSDYFLKLLSVSFDTDGAEDLLNVSGSWRGLATQHSQ*IRGH 125
R+ L + + +L E + K++ + G + LNV+ S G+A+ + R
Sbjct: 1010 RETLKTIHDDWLKMLTTEQKKVYDKIMDAVLNNKGGDICLNVASS--GIASLLLEGGRTA 1067
Query: 124 VTHF---LSPN*HETCNAERITFVVEQTSTSK 38
+ F L+P+ TCN ER + + E + +K
Sbjct: 1068 HSRFGIPLTPHETSTCNMERGSDLAELVTAAK 1099
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,771,409
Number of Sequences: 28952
Number of extensions: 136211
Number of successful extensions: 392
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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