Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_N17
         (458 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    23   1.8  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    23   1.8  
EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    22   3.2  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    22   3.2  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    22   3.2  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   4.2  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   4.2  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   4.2  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   7.3  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 5 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 4  ISXPWQDHGLKWME 45
          +S  W D+ LKW E
Sbjct: 56 LSLEWNDYNLKWNE 69


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 4 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 4  ISXPWQDHGLKWME 45
          +S  W D+ LKW E
Sbjct: 56 LSLEWNDYNLKWNE 69


>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 39  DGKTFTFLNSKCEXAHLMRRNPR*SNM 119
           D   F  L+S CE  +++ R P+  N+
Sbjct: 58  DKSIFAKLDSICEDCYMLFREPQLHNL 84


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
           peptide isoform B protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 39  DGKTFTFLNSKCEXAHLMRRNPR*SNM 119
           D   F  L+S CE  +++ R P+  N+
Sbjct: 58  DKSIFAKLDSICEDCYMLFREPQLHNL 84


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 39  DGKTFTFLNSKCEXAHLMRRNPR*SNM 119
           D   F  L+S CE  +++ R P+  N+
Sbjct: 58  DKSIFAKLDSICEDCYMLFREPQLHNL 84


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 3 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 4  ISXPWQDHGLKWME 45
          ++  W D+ LKW E
Sbjct: 56 LNLEWNDYNLKWNE 69


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 2 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 4  ISXPWQDHGLKWME 45
          ++  W D+ LKW E
Sbjct: 56 LNLEWNDYNLKWNE 69


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 1 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 4  ISXPWQDHGLKWME 45
          ++  W D+ LKW E
Sbjct: 56 LNLEWNDYNLKWNE 69


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 145 KKGQEEEQAKKRTTRTQK 198
           ++ +E +Q KKR   TQK
Sbjct: 207 RRAKERKQVKKREEVTQK 224


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,655
Number of Sequences: 336
Number of extensions: 1227
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10511300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)