Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_N17
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...    66   2e-12
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...    66   2e-12
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi...    31   0.11 
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   1.0  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    27   1.4  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    26   3.2  
SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit L3...    25   7.3  

>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score = 66.5 bits (155), Expect = 2e-12
 Identities = 32/53 (60%), Positives = 37/53 (69%)
 Frame = +1

Query: 109 KVTWTVLYRRKFKKGQEEEQAKKRTTRTQKFQRAIVGASLSDIMAXRNMXPEL 267
           +++WTVLYRR  KKG  EE AKKRT RT K QR IVGA+L  I   RN  PE+
Sbjct: 48  RLSWTVLYRRMHKKGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEV 100



 Score = 31.9 bits (69), Expect = 0.048
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 21  RPWIKVDGKTFTFLNSKCEXAHLMRRNPR 107
           R +++ D K F F+N K E   L R+NPR
Sbjct: 19  RLFVRGDNKVFRFVNKKSESLFLQRKNPR 47


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score = 66.5 bits (155), Expect = 2e-12
 Identities = 32/53 (60%), Positives = 37/53 (69%)
 Frame = +1

Query: 109 KVTWTVLYRRKFKKGQEEEQAKKRTTRTQKFQRAIVGASLSDIMAXRNMXPEL 267
           +++WTVLYRR  KKG  EE AKKRT RT K QR IVGA+L  I   RN  PE+
Sbjct: 48  RLSWTVLYRRMHKKGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEV 100



 Score = 31.9 bits (69), Expect = 0.048
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 21  RPWIKVDGKTFTFLNSKCEXAHLMRRNPR 107
           R +++ D K F F+N K E   L R+NPR
Sbjct: 19  RLFVRGDNKVFRFVNKKSESLFLQRKNPR 47


>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 30.7 bits (66), Expect = 0.11
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 27  WIKVDGKTFTFLNSKCEXAHLMRRNPR 107
           +++ D K F F  SKC     M+RNPR
Sbjct: 21  FVRNDSKVFRFCRSKCHKNFKMKRNPR 47


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = -1

Query: 239 IMSLSEAPTIARWNFWVLV---VRFFACSSSWPFLNLRLYRTVHVTLARI 99
           I++L      A W  W  V   V      S W  L+  L +  H+TLA+I
Sbjct: 600 IVALQNMDPAAGWGEWFAVSIPVSLLCIFSIWFLLSFGLLKDEHITLAKI 649


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -1

Query: 62  QECEGFSIHFNP-WSCHGLDI 3
           Q  +G S+H+ P W CHGL I
Sbjct: 111 QLLKGRSVHYVPGWDCHGLPI 131


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 86  FDEEESSLK*HGLSCTGASSKRAKRKNKQRNV 181
           F EE   L   G +CT   S++ ++KN + N+
Sbjct: 424 FQEEMIHLLEMGEACTSRESQKTRKKNLKENI 455


>SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit
           L31|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 115

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 94  GGILAKVTWTVLYRRKFKKGQ 156
           GG++ KV W +  RRK++  Q
Sbjct: 13  GGLVHKVPWRLSQRRKYRHRQ 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,352,119
Number of Sequences: 5004
Number of extensions: 20579
Number of successful extensions: 65
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)