Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_N17
         (458 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0279 - 23794964-23795111,23795486-23795634,23796120-237962...    50   7e-07
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731...    50   7e-07
07_01_0849 + 6896930-6896996,6897453-6897474,6897615-6897690,689...    49   2e-06
03_05_0593 - 25959013-25959789                                         33   0.11 
07_01_1199 + 11391638-11391718,11393477-11393590,11393690-113938...    30   0.78 
02_01_0011 + 78277-78487,78594-79417                                   28   4.2  
05_07_0285 + 28982502-28982782,28982888-28982989,28983189-289840...    27   7.3  
11_01_0245 + 1884361-1884400,1884549-1885282                           27   9.6  

>05_05_0279 -
           23794964-23795111,23795486-23795634,23796120-23796221,
           23796309-23796384,23796578-23796588
          Length = 161

 Score = 50.4 bits (115), Expect = 7e-07
 Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
 Frame = +1

Query: 106 AKVTWTVLYRRKFKKGQEEEQAKKRTTRTQK-FQRAIVGASLSDIMAXRNMXPEL 267
           AK+TWT +YR++ KK    E  KKR   T+K + R+IVGASL  I   R   PE+
Sbjct: 49  AKLTWTAMYRKQHKKDIHAEAVKKRRRTTKKPYSRSIVGASLEVIQKKRAEKPEV 103


>01_06_1123 + 34671365-34671883,34672366-34672625,34673045-34673143,
            34673237-34675178,34675588-34675658,34676158-34676307,
            34676963-34677038,34677131-34677232,34677707-34677855,
            34678214-34678364
          Length = 1172

 Score = 50.4 bits (115), Expect = 7e-07
 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
 Frame = +1

Query: 106  AKVTWTVLYRRKFKKGQEEEQAKKRTTRTQK-FQRAIVGASLSDIMAXRNMXPEL 267
            AK+TWT +YR++ KK    E  KKR   T+K + R+IVGA+L  I   R+  PE+
Sbjct: 1059 AKLTWTAMYRKQHKKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQKKRSEKPEV 1113


>07_01_0849 +
           6896930-6896996,6897453-6897474,6897615-6897690,
           6897775-6897876,6898156-6898304,6898637-6898784
          Length = 187

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
 Frame = +1

Query: 106 AKVTWTVLYRRKFKKGQEEEQAKKRTTRTQK-FQRAIVGASLSDIMAXRNMXPEL 267
           AK+TWT +YR++ KK    E  KKR   T+K + R+IVGA+L  I   R   PE+
Sbjct: 75  AKLTWTAMYRKQHKKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEV 129


>03_05_0593 - 25959013-25959789
          Length = 258

 Score = 33.1 bits (72), Expect = 0.11
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -1

Query: 227 SEAPTIARWNFWVLVVRFFACSSSWP-FLNLRLYRTVHVTLARIPPHQMG 81
           +E P+ +     +L  + F CSS+ P FL+ R  R  HV +A  PP   G
Sbjct: 46  AEGPSSSMSPTSILETKQFCCSSAMPPFLSERSLRKAHVEMAAAPPEPAG 95


>07_01_1199 +
           11391638-11391718,11393477-11393590,11393690-11393826,
           11393905-11394064
          Length = 163

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 27  WIKVDGKTFTFLNSKCEXAHLMRRNPR 107
           +++ D K F F  SKC     M+RNPR
Sbjct: 21  FVRNDAKIFRFCRSKCHKNFKMKRNPR 47


>02_01_0011 + 78277-78487,78594-79417
          Length = 344

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 124 VLYRRKFKKGQEEEQAKKRTTRTQKFQRAIVGASLSDIMAXR 249
           V Y    K+  EE QAKK++T+T+     I G  +  +M  R
Sbjct: 235 VAYNAGMKRRMEEMQAKKKSTKTKLVFMDIYGFLMDMMMRPR 276


>05_07_0285 +
           28982502-28982782,28982888-28982989,28983189-28984006,
           28984594-28985050,28985203-28985242
          Length = 565

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +1

Query: 94  GGILAKVTWTVLYRR-KFKKGQEEEQAK 174
           GGILA    T LYRR ++K+G ++ Q++
Sbjct: 151 GGILATTATTNLYRRQRYKEGMKDIQSQ 178


>11_01_0245 + 1884361-1884400,1884549-1885282
          Length = 257

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 56  IPEFKM*XRPFDEEESSLK*HGLSCTGASSKRAKRKNKQRN 178
           I +  M   PF+ ++  L   GL  T   +K  +R+N+ RN
Sbjct: 105 IADLNMVRLPFEMDDELLPADGLGSTDTDNKCQQRQNQSRN 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,953,879
Number of Sequences: 37544
Number of extensions: 141761
Number of successful extensions: 388
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)