Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_N17
         (458 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)        75   3e-14
SB_32312| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)        75   3e-14
SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40)        75   3e-14
SB_5679| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)         75   3e-14
SB_35727| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.1e-07)        75   3e-14
SB_6626| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)         75   3e-14
SB_41736| Best HMM Match : Ribosomal_L24e (HMM E-Value=3.2e-07)        73   2e-13
SB_49067| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.8e-07)        72   3e-13
SB_12479| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   1e-07
SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_4475| Best HMM Match : VPEP (HMM E-Value=7.2)                       27   5.6  
SB_14930| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_11510| Best HMM Match : MGDG_synth (HMM E-Value=5.3)                27   9.9  
SB_40632| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 113

 Score = 74.9 bits (176), Expect = 3e-14
 Identities = 34/53 (64%), Positives = 42/53 (79%)
 Frame = +1

Query: 109 KVTWTVLYRRKFKKGQEEEQAKKRTTRTQKFQRAIVGASLSDIMAXRNMXPEL 267
           +VTWTVLYRRK KKG +EE +KKRT R  KFQR++ GASL +I+A RN  PE+
Sbjct: 28  EVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80



 Score = 38.3 bits (85), Expect = 0.003
 Identities = 19/44 (43%), Positives = 25/44 (56%)
 Frame = +3

Query: 45  KTFTFLNSKCEXAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKE 176
           K F FLN +CE A LMRRNPR        + + +KG +   SK+
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKK 50


>SB_32312| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 90

 Score = 74.9 bits (176), Expect = 3e-14
 Identities = 34/53 (64%), Positives = 42/53 (79%)
 Frame = +1

Query: 109 KVTWTVLYRRKFKKGQEEEQAKKRTTRTQKFQRAIVGASLSDIMAXRNMXPEL 267
           +VTWTVLYRRK KKG +EE +KKRT R  KFQR++ GASL +I+A RN  PE+
Sbjct: 28  EVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80



 Score = 38.3 bits (85), Expect = 0.003
 Identities = 19/44 (43%), Positives = 25/44 (56%)
 Frame = +3

Query: 45  KTFTFLNSKCEXAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKE 176
           K F FLN +CE A LMRRNPR        + + +KG +   SK+
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKK 50


>SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40)
          Length = 154

 Score = 74.9 bits (176), Expect = 3e-14
 Identities = 34/53 (64%), Positives = 42/53 (79%)
 Frame = +1

Query: 109 KVTWTVLYRRKFKKGQEEEQAKKRTTRTQKFQRAIVGASLSDIMAXRNMXPEL 267
           +VTWTVLYRRK KKG +EE +KKRT R  KFQR++ GASL +I+A RN  PE+
Sbjct: 48  EVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 100



 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 21/50 (42%), Positives = 30/50 (60%)
 Frame = +3

Query: 27  WIKVDGKTFTFLNSKCEXAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKE 176
           +++ DGK F FLN +CE A LMRRNPR        + + +KG +   SK+
Sbjct: 21  YVRQDGKVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKK 70


>SB_5679| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 90

 Score = 74.9 bits (176), Expect = 3e-14
 Identities = 34/53 (64%), Positives = 42/53 (79%)
 Frame = +1

Query: 109 KVTWTVLYRRKFKKGQEEEQAKKRTTRTQKFQRAIVGASLSDIMAXRNMXPEL 267
           +VTWTVLYRRK KKG +EE +KKRT R  KFQR++ GASL +I+A RN  PE+
Sbjct: 28  EVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80



 Score = 38.3 bits (85), Expect = 0.003
 Identities = 19/44 (43%), Positives = 25/44 (56%)
 Frame = +3

Query: 45  KTFTFLNSKCEXAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKE 176
           K F FLN +CE A LMRRNPR        + + +KG +   SK+
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKK 50


>SB_35727| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.1e-07)
          Length = 139

 Score = 74.9 bits (176), Expect = 3e-14
 Identities = 34/53 (64%), Positives = 42/53 (79%)
 Frame = +1

Query: 109 KVTWTVLYRRKFKKGQEEEQAKKRTTRTQKFQRAIVGASLSDIMAXRNMXPEL 267
           +VTWTVLYRRK KKG +EE +KKRT R  KFQR++ GASL +I+A RN  PE+
Sbjct: 63  EVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 115



 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 20/48 (41%), Positives = 27/48 (56%)
 Frame = +3

Query: 33  KVDGKTFTFLNSKCEXAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKE 176
           K  GK F +LN +CE A LMRRNPR        + + +KG +   SK+
Sbjct: 38  KFQGKVFNYLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKK 85


>SB_6626| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
          Length = 90

 Score = 74.9 bits (176), Expect = 3e-14
 Identities = 34/53 (64%), Positives = 42/53 (79%)
 Frame = +1

Query: 109 KVTWTVLYRRKFKKGQEEEQAKKRTTRTQKFQRAIVGASLSDIMAXRNMXPEL 267
           +VTWTVLYRRK KKG +EE +KKRT R  KFQR++ GASL +I+A RN  PE+
Sbjct: 28  EVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80



 Score = 38.3 bits (85), Expect = 0.003
 Identities = 19/44 (43%), Positives = 25/44 (56%)
 Frame = +3

Query: 45  KTFTFLNSKCEXAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKE 176
           K F FLN +CE A LMRRNPR        + + +KG +   SK+
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKK 50


>SB_41736| Best HMM Match : Ribosomal_L24e (HMM E-Value=3.2e-07)
          Length = 104

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 33/53 (62%), Positives = 41/53 (77%)
 Frame = +1

Query: 109 KVTWTVLYRRKFKKGQEEEQAKKRTTRTQKFQRAIVGASLSDIMAXRNMXPEL 267
           +VTWTVLYRR  KKG +EE +KKRT R  KFQR++ GASL +I+A RN  PE+
Sbjct: 28  EVTWTVLYRRMHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80



 Score = 37.9 bits (84), Expect = 0.004
 Identities = 19/44 (43%), Positives = 24/44 (54%)
 Frame = +3

Query: 45  KTFTFLNSKCEXAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKE 176
           K F FLN +CE A LMRRNPR        +   +KG +   SK+
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRRMHKKGTQEEVSKK 50


>SB_49067| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.8e-07)
          Length = 90

 Score = 71.7 bits (168), Expect = 3e-13
 Identities = 33/53 (62%), Positives = 41/53 (77%)
 Frame = +1

Query: 109 KVTWTVLYRRKFKKGQEEEQAKKRTTRTQKFQRAIVGASLSDIMAXRNMXPEL 267
           +VTWTVLYR K KKG +EE +KKRT R  KFQR++ GASL +I+A RN  PE+
Sbjct: 28  EVTWTVLYRCKHKKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80



 Score = 38.7 bits (86), Expect = 0.002
 Identities = 19/44 (43%), Positives = 25/44 (56%)
 Frame = +3

Query: 45  KTFTFLNSKCEXAHLMRRNPR*SNMDCPVQAQVQKGPRGRTSKE 176
           K F FLN +CE A LMRRNPR        + + +KG +   SK+
Sbjct: 7   KVFNFLNKRCERALLMRRNPREVTWTVLYRCKHKKGTQEEVSKK 50


>SB_12479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 52

 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 24/41 (58%), Positives = 31/41 (75%)
 Frame = +1

Query: 145 KKGQEEEQAKKRTTRTQKFQRAIVGASLSDIMAXRNMXPEL 267
           KKG +EE +KKRT R  KFQR++ GASL +I+A RN  PE+
Sbjct: 2   KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 42


>SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2937

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 176  FFACSSSWPFLNLRLYRTVHVTLARIP 96
            +FAC+   P  N  +  T HVTL  IP
Sbjct: 2679 YFACTRDLPISNFDVISTRHVTLQAIP 2705


>SB_4475| Best HMM Match : VPEP (HMM E-Value=7.2)
          Length = 129

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 83  PFDEEESSLK*HGLSCTGASSKRAKRKNKQRNVLQ 187
           P +EE ++    GLS   +S  + K+K K++++ Q
Sbjct: 43  PMEEESAATALAGLSLGSSSGTKKKKKKKRKHIFQ 77


>SB_14930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 39  DGKTFTFLNSKCEXAHLMRRNPR*SNMDCPVQAQ 140
           +G+T T L  + + A   R NPR  N   PV AQ
Sbjct: 69  EGRTITVLTPENDLADDHRNNPRLQNNRKPVNAQ 102


>SB_11510| Best HMM Match : MGDG_synth (HMM E-Value=5.3)
          Length = 368

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 39  DGKTFTFLNSKCEXAHLMRRNPR*SNMDCPVQAQ 140
           +G+T T L  + + A   R NPR  N   PV AQ
Sbjct: 321 EGRTITVLTPENDLADDHRNNPRLQNNRKPVNAQ 354


>SB_40632| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 135 AQVQKGPRGRTSKETYYKDPKVPTCDCWC 221
           A V   P+   ++ETYY   +VPT +C C
Sbjct: 16  ASVSLDPKYCINQETYYSIYQVPTHNCDC 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,189,059
Number of Sequences: 59808
Number of extensions: 163417
Number of successful extensions: 393
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)