Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_N17
         (458 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal pr...    43   9e-05
Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical p...    27   5.0  
Z46267-12|CAD45595.2|  528|Caenorhabditis elegans Hypothetical p...    27   5.0  
Z46267-11|CAA86426.1|  611|Caenorhabditis elegans Hypothetical p...    27   5.0  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    27   6.6  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    27   6.6  

>AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 24.1 protein.
          Length = 159

 Score = 43.2 bits (97), Expect = 9e-05
 Identities = 24/50 (48%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +1

Query: 112 VTWTVLYRRKFKKG---QEEEQAKKRTTRTQKFQRAIVGASLSDIMAXRN 252
           + WTVLYR K KKG   QE+   KK     Q   RA+ G SL  I+A RN
Sbjct: 49  IRWTVLYRIKNKKGTHGQEQVTRKKTKKSVQVVNRAVAGLSLDAILAKRN 98



 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 30  IKVDGKTFTFLNSKCEXAHLMRRNPR*SNMDCPVQAQVQKGPRGR 164
           ++ DGK   FL+ K      +RRNPR        + + +KG  G+
Sbjct: 22  VRTDGKVQIFLSGKALKGAKLRRNPRDIRWTVLYRIKNKKGTHGQ 66


>Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical
           protein F49E2.5j protein.
          Length = 1100

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 126 PVQAQVQKGPRGRTSKETYYKDPKVPTCD 212
           PVQ QV++  + + SK+T   + K PT D
Sbjct: 543 PVQEQVKEQKKSKKSKKTSESESKRPTAD 571


>Z46267-12|CAD45595.2|  528|Caenorhabditis elegans Hypothetical
           protein F49E2.5g protein.
          Length = 528

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 126 PVQAQVQKGPRGRTSKETYYKDPKVPTCD 212
           PVQ QV++  + + SK+T   + K PT D
Sbjct: 460 PVQEQVKEQKKSKKSKKTSESESKRPTAD 488


>Z46267-11|CAA86426.1|  611|Caenorhabditis elegans Hypothetical
           protein F49E2.5f protein.
          Length = 611

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 126 PVQAQVQKGPRGRTSKETYYKDPKVPTCD 212
           PVQ QV++  + + SK+T   + K PT D
Sbjct: 543 PVQEQVKEQKKSKKSKKTSESESKRPTAD 571


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +2

Query: 8    PXHGKTMD*SGWKNLHIPEFKM*XRPFDEEESSLK*HGLSCTGASSK 148
            P H +  D S ++N   PE     +P DEE+  L+  G   +G S K
Sbjct: 3973 PIHSQKEDISQFQNESSPEDVKSEQPHDEEKPDLERQGSYSSGYSPK 4019


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +2

Query: 8    PXHGKTMD*SGWKNLHIPEFKM*XRPFDEEESSLK*HGLSCTGASSK 148
            P H +  D S ++N   PE     +P DEE+  L+  G   +G S K
Sbjct: 3973 PIHSQKEDISQFQNESSPEDVKSEQPHDEEKPDLERQGSYSSGYSPK 4019


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,564,205
Number of Sequences: 27780
Number of extensions: 119308
Number of successful extensions: 310
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)