Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_N17
(458 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S ... 46 9e-06
At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A) 46 1e-05
At5g66910.1 68418.m08434 disease resistance protein (CC-NBS-LRR ... 31 0.28
At2g44860.1 68415.m05585 60S ribosomal protein L24, putative 30 0.65
At2g04030.2 68415.m00372 heat shock protein, putative strong sim... 28 3.5
At2g04030.1 68415.m00371 heat shock protein, putative strong sim... 28 3.5
At2g35310.1 68415.m04330 transcriptional factor B3 family protei... 27 6.1
At5g09780.1 68418.m01132 transcriptional factor B3 family protei... 27 8.1
At5g02630.1 68418.m00199 expressed protein 27 8.1
>At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S
ribosomal protein L24, Arabidopsis thaliana,
EMBL:AC006282
Length = 163
Score = 46.4 bits (105), Expect = 9e-06
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +1
Query: 106 AKVTWTVLYRRKFKKGQEEEQAKKRTTRTQK-FQRAIVGASLSDIMAXRNMXPEL 267
+K+ WT +YR++ KK +E K+R T+K + R+IVGA+L I R PE+
Sbjct: 49 SKLAWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEV 103
>At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)
Length = 164
Score = 46.0 bits (104), Expect = 1e-05
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +1
Query: 106 AKVTWTVLYRRKFKKGQEEEQAKKRTTRTQK-FQRAIVGASLSDIMAXRNMXPEL 267
+K+ WT +YR++ KK +E K+R T+K + R+IVGA+L I R PE+
Sbjct: 49 SKLCWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEV 103
>At5g66910.1 68418.m08434 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 815
Score = 31.5 bits (68), Expect = 0.28
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = -1
Query: 245 LAIMSLSEAPTIARWNFWVLVVRFFACSSSWPFLNLRLYRTVHVTLARIPPHQMG 81
+A M + TIA F+ + F+C SS P L + V VTL IP Q+G
Sbjct: 572 IAEMKKLKVLTIANHGFYPARLSNFSCLSSLPNLKRIRFEKVSVTLLDIPQLQLG 626
>At2g44860.1 68415.m05585 60S ribosomal protein L24, putative
Length = 159
Score = 30.3 bits (65), Expect = 0.65
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 27 WIKVDGKTFTFLNSKCEXAHLMRRNPR 107
+++ D K F F SKC M+RNPR
Sbjct: 21 FVRNDAKIFRFCRSKCHKNFKMKRNPR 47
>At2g04030.2 68415.m00372 heat shock protein, putative strong
similarity to heat shock protein [Arabidopsis thaliana]
GI:1906830; contains Pfam profiles PF02518: ATPase,
histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein, PF00183: Hsp90 protein
Length = 777
Score = 27.9 bits (59), Expect = 3.5
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 145 KKGQEEEQAKKRTTRTQKF 201
K+G+E E KK+TT+T+K+
Sbjct: 305 KEGEEGEPKKKKTTKTEKY 323
>At2g04030.1 68415.m00371 heat shock protein, putative strong
similarity to heat shock protein [Arabidopsis thaliana]
GI:1906830; contains Pfam profiles PF02518: ATPase,
histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein, PF00183: Hsp90 protein
Length = 780
Score = 27.9 bits (59), Expect = 3.5
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 145 KKGQEEEQAKKRTTRTQKF 201
K+G+E E KK+TT+T+K+
Sbjct: 305 KEGEEGEPKKKKTTKTEKY 323
>At2g35310.1 68415.m04330 transcriptional factor B3 family protein
contains Pfam profile PF02362: B3 DNA binding domain
Length = 288
Score = 27.1 bits (57), Expect = 6.1
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +1
Query: 130 YRRKF---KKGQEEEQAKKRTTRTQKFQRAIVGASLSDI 237
Y+RK KK EE KRT + QR GAS S +
Sbjct: 157 YKRKLNFEKKKAEESHNSKRTDKVFSVQRESAGASSSSV 195
>At5g09780.1 68418.m01132 transcriptional factor B3 family protein
contains Pfam profile PF02362: B3 DNA binding domain
Length = 308
Score = 26.6 bits (56), Expect = 8.1
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = +1
Query: 130 YRRKF---KKGQEEEQAKKRTTRTQKFQR 207
Y+RK KK EE Q KRT RTQ +R
Sbjct: 169 YKRKLNFGKKKAEETQTYKRTERTQNSKR 197
>At5g02630.1 68418.m00199 expressed protein
Length = 428
Score = 26.6 bits (56), Expect = 8.1
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -1
Query: 311 CSFAALMACSLCALRSSGFILRLAIMSLSEAPTIARWNFWVLVVRF 174
C+ M S+C LR + A+ +L++ P + + F+VLV+ +
Sbjct: 320 CAIVFAMVWSMCCLRETSKTDGKAVKNLAKLPVLRK--FYVLVIGY 363
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,276,486
Number of Sequences: 28952
Number of extensions: 115935
Number of successful extensions: 323
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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