Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_N16
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 29 0.44
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 29 0.59
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 28 1.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.4
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.8
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch... 27 2.4
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 27 2.4
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 2.4
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 3.1
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 27 3.1
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 26 4.1
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi... 26 4.1
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 26 5.5
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 26 5.5
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 26 5.5
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 25 7.2
SPBC106.05c |tim11||F0-ATPase subunit E|Schizosaccharomyces pomb... 25 7.2
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 25 7.2
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.2
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 9.5
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 25 9.5
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.5
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 25 9.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 9.5
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 29.5 bits (63), Expect = 0.44
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +2
Query: 140 KELARLKKMLGVKDEEKPAGSEV 208
+E+A L+KMLG+K ++K A S++
Sbjct: 115 REIAHLEKMLGIKSKDKSAHSKI 137
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 29.1 bits (62), Expect = 0.59
Identities = 19/81 (23%), Positives = 37/81 (45%)
Frame = +2
Query: 134 AVKELARLKKMLGVKDEEKPAGSEVMESEQVIFLDAGDLKKSKKVLQDIEKDNEDVEMSS 313
A KE+ RL ++ SE+ ++E+V + K + L D E ++E+V +
Sbjct: 77 ATKEIDRLYELENEGSSSSSESSEITDNEEVASASSKSTKSEE--LTDEESEDEEVYDPA 134
Query: 314 DDENVVVDSEGGKKRVFNTKT 376
E ++ SE + ++T
Sbjct: 135 RGEGIISTSESSDESDAESET 155
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = -3
Query: 252 FKSPASRNITCSDS-ITSLPAGFSSSLTPSIFFNRANSFTAYRS 124
F++P + I+ +S ++S P +SSLTP N A ++A+RS
Sbjct: 174 FQTPRAAAISKRESGVSSEPRARTSSLTPGNTPNSAKQWSAFRS 217
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -3
Query: 246 SPASRNITCSDSITSLPAGFSSSLTPSIFFNRANS--FTAYRSRLIALH 106
+PAS T + S++S + SSS TPS + A S + S LIAL+
Sbjct: 749 TPASSTSTTTSSVSSRQSSSSSSFTPSSAISTAKSSFVLSTLSILIALY 797
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 260 KKVLQDI-EKDNEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQNGQY 400
K VL+D+ +KDNE SD+E+ V D E F+ K N +Y
Sbjct: 160 KGVLEDVLKKDNELKFNDSDEEDEVDDEEIESFNSFSRKMQTISNSRY 207
>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 437
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +2
Query: 281 EKDNEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQN 391
+ +N D E DD++++ + +N+K+LK++N
Sbjct: 9 DDENYDFEFEDDDDDMIEPYVDVENCYYNSKSLKEEN 45
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +2
Query: 242 GDLKKSKKVLQDIEKDNEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQNGQ 397
GDLKK +V Q E D+ S E + S K R++ + G+
Sbjct: 17 GDLKKDVEVAQPPEDSISDLAFSPQAEYLAASSWDSKVRIYEVQATGQSIGK 68
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 243 PASRNITCSDSITSLPAGFSSSLTPSIF 160
P S + S SIT++ +G SSS PS F
Sbjct: 546 PTSSSSDFSSSITTISSGISSSSIPSTF 573
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.6 bits (56), Expect = 3.1
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Frame = +2
Query: 74 AKSIRSRWKRKCRAIKR-ERYAVKE-LARLKKMLG--VKDEEKPAGSEVMESEQVIFLDA 241
+KS+R+ K RAI +R+ V E +++L + +K K E E VI +D
Sbjct: 1582 SKSVRT----KLRAISTIQRFPVSEWVSKLDTHVRNCIKFSHKQNLEEDFIHEPVIDVDE 1637
Query: 242 GDLKKSKKVLQDIEKDNEDVEMSSDDENVVVDSEG 346
+ SK DI+ D ED+E+ +N +DS G
Sbjct: 1638 FAISSSK----DIDAD-EDLEIIGSSDNKAIDSNG 1667
>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -2
Query: 331 HN-VFII*THFDVFIILFDVL*YFF 260
HN F I TH FI+ F VL YF+
Sbjct: 205 HNETFNIWTHLSAFIVFFAVLAYFY 229
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +2
Query: 155 LKKMLGVKDEEKPAGSEVMESEQVIFLDAGDLKKSKKVLQDIEKDNEDVEMSSDDENVVV 334
LK +G+K+ E S +SE ++F + D K L D+E + + S +V
Sbjct: 215 LKSYIGLKNMEYRVRSSFNQSETIVFSGSED---GKVYLWDLENETQITSTSVVGTPIVT 271
Query: 335 D 337
D
Sbjct: 272 D 272
>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
Tim44|Schizosaccharomyces pombe|chr 2|||Manual
Length = 427
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 95 WKRKCRAIKRERYAVKELARLKKMLGVKDEEKPAGSEVME 214
WK K IK E V+++ LKK ++ E P S + +
Sbjct: 211 WKNKVEQIKNESRLVRKIQELKK--SYQESEHPIVSSIRD 248
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 287 DNEDVEMSSDDENVVVDSEGGKK 355
+ EDVEM S+D++ +SE G K
Sbjct: 1322 NEEDVEMRSEDQSDTSESEVGSK 1344
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 25.8 bits (54), Expect = 5.5
Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Frame = +2
Query: 71 MAKSIRSRWKRKCRAIKRERYAVKELARLKKMLGVKDEEKPAGSEVMES-EQVIFLDAGD 247
+ S+R + ++ ++ + RY+++ +A +K VK E + +E + + D
Sbjct: 823 LQNSVREDFDKQTSSLAQLRYSIQNVAHAQKESEVKYNELNEQVKTLEGYVETVLEKFND 882
Query: 248 LKKSKKVLQDIEKDNEDVEMSSDDENVVVDSEGGKKRV 361
LK KV + + + NV V S+ K V
Sbjct: 883 LKIENKVPETAPDVVPSSYPPAAESNVSVSSDTSTKDV 920
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +2
Query: 275 DIEKDNEDVEMSSDDENVVVDSE 343
D+E+D +DVE SS++E V DS+
Sbjct: 351 DVEEDEDDVESSSNEE--VSDSD 371
>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 493
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 227 IFLDAGDLKKSKKVLQDIEKDNEDVEMSSD 316
IF + GDLKK + QD+ + V+ S+
Sbjct: 166 IFSETGDLKKGIAIFQDLSDAEQAVQYLSN 195
>SPBC106.05c |tim11||F0-ATPase subunit E|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 96
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +2
Query: 92 RWKRKCRAIKRERYAVKELARLKKMLGVKDEEKPAGSEVMESEQVIFLDAGDLK-KSKKV 268
RW + Y + + +K + DE ++ES ++ +L+ + K +
Sbjct: 14 RWSALVLGLGAGMYEHRSHIQCQKQKEI-DENYHRQESLIESAKIAYLNTKNTPPKEDSM 72
Query: 269 LQDIEKDNEDVEM 307
L +++KD+ED +M
Sbjct: 73 LPNLKKDSEDFDM 85
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 243 PASRNITCSDSITSLPAGFSSSLTP 169
P R+ + S+ +TS+ SSSL+P
Sbjct: 359 PTKRSFSMSEIVTSMQMSISSSLSP 383
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 6 LSRDYLQKRVAL--LQNIFVFKTQWRNRLGADGSENAGRSNENGM 134
LS ++ +K+ L LQN + +T R +G+DGS + E M
Sbjct: 244 LSENFQRKQEILSGLQNNVILRTNNRKPVGSDGSNSNFNGGEEQM 288
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/28 (35%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Frame = +2
Query: 212 ESEQVIFLDAGDLKKS-KKVLQDIEKDN 292
E +++ DA ++K+ K+V++D+EK+N
Sbjct: 1600 EEHSIVYEDAKLMEKTLKEVIEDLEKNN 1627
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 212 ESEQVIFLDAGDLKKSKKVLQDIEKDNEDVEMSS 313
+ E + +L D+ K KK + +EK N+D + S
Sbjct: 54 QKEFLPYLTTEDVGKHKKTKESLEKSNDDSQKIS 87
>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/33 (27%), Positives = 21/33 (63%)
Frame = -2
Query: 349 AAFTIDHNVFII*THFDVFIILFDVL*YFFAFL 251
A F++DH +F++ + + +F+++ +F A L
Sbjct: 172 AHFSLDHWIFVVEYYAPIVFYVFNLMGFFLAAL 204
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -1
Query: 389 SDLSKFSY*KLFSCRLHYRPQRFHHLNSFRRLHYPFRCLVILFCFSLNRPR 237
+DL +F+ K +LH+ P R H L F + +VI + + R R
Sbjct: 768 ADLLRFNALKARKKQLHFGPSRIHTLGLFAMENIDKNDMVIEYIGEIIRQR 818
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +2
Query: 176 KDEEKPAGSEVMESEQVIFLDAGDLKKSKKVLQDIEKDNEDVEMS--SDDENVVVDSEG 346
K+EE+P SE +++ + D D ++ L + ++ ++++ S+D + + +EG
Sbjct: 503 KEEERPLPSEPSQNQPAEYRDTPDTPRNIMPLPGLMSADQPIKVTEPSNDADKAIVAEG 561
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,310,439
Number of Sequences: 5004
Number of extensions: 42329
Number of successful extensions: 188
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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