Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_N15
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9429| Best HMM Match : Pili_assembly_N (HMM E-Value=5.8)            29   4.5  
SB_32710| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_20186| Best HMM Match : hATC (HMM E-Value=0.14)                     28   7.8  
SB_57054| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_56381| Best HMM Match : hATC (HMM E-Value=0.14)                     28   7.8  
SB_9632| Best HMM Match : hATC (HMM E-Value=0.16)                      28   7.8  

>SB_9429| Best HMM Match : Pili_assembly_N (HMM E-Value=5.8)
          Length = 125

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 94  TYIMKLKKAKSDTEEVIPPQAEI 162
           TY  K KK ++D E  +PPQ +I
Sbjct: 73  TYFSKYKKKRTDKESRLPPQVQI 95


>SB_32710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +1

Query: 265 YKNADDEYKSIQ---NKLDDIVKSTGGQIVYNGDQFTAYQLLGKQPALKDLER 414
           ++ A+  + S+Q   +K   +  +  G++    D+F AYQ LG    L DL R
Sbjct: 127 HERANQTFDSVQFFISKFPTLEAAMEGKMDALYDEFCAYQALGNDSQLSDLSR 179


>SB_20186| Best HMM Match : hATC (HMM E-Value=0.14)
          Length = 709

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +1

Query: 265 YKNADDEYKSIQ---NKLDDIVKSTGGQIVYNGDQFTAYQLLGKQPALKDLER 414
           ++ A+  + S+Q   +K   +  +  G++    D+F AYQ LG    L DL R
Sbjct: 549 HERANQTFDSVQFFISKFPTLEAAMEGKMDALYDEFCAYQALGNDSQLSDLSR 601


>SB_57054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 955

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +1

Query: 265 YKNADDEYKSIQ---NKLDDIVKSTGGQIVYNGDQFTAYQLLGKQPALKDLER 414
           ++ A+  + S+Q   +K   +  +  G++    D+F AYQ LG    L DL R
Sbjct: 795 HERANQTFDSVQFFISKFPTLEAAMEGKMDALYDEFCAYQALGNDSQLSDLSR 847


>SB_56381| Best HMM Match : hATC (HMM E-Value=0.14)
          Length = 249

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +1

Query: 265 YKNADDEYKSIQ---NKLDDIVKSTGGQIVYNGDQFTAYQLLGKQPALKDLER 414
           ++ A+  + S+Q   +K   +  +  G++    D+F AYQ LG    L DL R
Sbjct: 89  HERANQTFDSVQFFISKFPTLEAAMEGKMDALYDEFCAYQALGNDSQLSDLSR 141


>SB_9632| Best HMM Match : hATC (HMM E-Value=0.16)
          Length = 248

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +1

Query: 265 YKNADDEYKSIQ---NKLDDIVKSTGGQIVYNGDQFTAYQLLGKQPALKDLER 414
           ++ A+  + S+Q   +K   +  +  G++    D+F AYQ LG    L DL R
Sbjct: 89  HERANQTFDSVQFFISKFPTLEAAMEGKMDALYDEFCAYQALGNDSQLSDLSR 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,242,165
Number of Sequences: 59808
Number of extensions: 240451
Number of successful extensions: 533
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)