Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_N15
         (664 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein c...    31   0.90 
At1g03055.2 68414.m00279 expressed protein                             28   6.4  
At1g03055.1 68414.m00278 expressed protein                             28   6.4  
At5g25130.1 68418.m02977 cytochrome P450 family protein CYTOCHRO...    27   8.4  
At2g25230.1 68415.m03019 myb family transcription factor (MYB100...    27   8.4  
At1g67500.1 68414.m07688 DNA polymerase family B protein similar...    27   8.4  

>At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein
           contains Pfam domain PF01902: Domain of unknown function
          Length = 715

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = +3

Query: 315 YS*EHWRPDCLQRRSIH-RVSVAWKTTSIERLGASKCGHNKI*IT--FYVYLKGQTNNTK 485
           Y  E W  DC+Q+R +  +V VA  + S E +   +    ++ I   F VYL  +T +  
Sbjct: 575 YKPEKWHQDCVQKRVVDGKVCVAVLSISAELMRKLQGEEEELEIVSRFCVYLLNKTLSEN 634

Query: 486 RTSXEDSW*RKIPFS 530
             S +D+   +I FS
Sbjct: 635 SFSWQDTTSLRIHFS 649


>At1g03055.2 68414.m00279 expressed protein
          Length = 200

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 468 QTNNTKRTSXEDSW*RKIPFSFTRKN 545
           +T+NTK  S EDS+  KI  ++  KN
Sbjct: 56  ETSNTKNASIEDSFFSKIAINYLSKN 81


>At1g03055.1 68414.m00278 expressed protein
          Length = 264

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 468 QTNNTKRTSXEDSW*RKIPFSFTRKN 545
           +T+NTK  S EDS+  KI  ++  KN
Sbjct: 56  ETSNTKNASIEDSFFSKIAINYLSKN 81


>At5g25130.1 68418.m02977 cytochrome P450 family protein CYTOCHROME
           P450 71B1 - Thlaspi arvense, EMBL:L24438
          Length = 496

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 109 LKKAKSDTEEVIPPQAEIIEADLYKRSY 192
           LKKA+++  EVI  + +IIE D+ +  Y
Sbjct: 320 LKKAQAEVREVIKHKDDIIEEDIERLQY 347


>At2g25230.1 68415.m03019 myb family transcription factor (MYB100)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 234

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +2

Query: 233 KKNYQKSNYK--HTKMPTMSTKVSKTNWT 313
           KKNYQK N K   T      + + K NWT
Sbjct: 2   KKNYQKKNIKVVSTSKYLKKSDIDKVNWT 30


>At1g67500.1 68414.m07688 DNA polymerase family B protein similar to
            SP|Q61493 DNA polymerase zeta catalytic subunit (EC
            2.7.7.7) {Mus musculus}; contains Pfam profile PF00136:
            DNA polymerase family B
          Length = 1890

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 342  CLQRRSIHRVSVAWKTTSIER 404
            CLQ +S    ++ WKT+ +ER
Sbjct: 1806 CLQNKSAAAATIVWKTSKLER 1826


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,968,617
Number of Sequences: 28952
Number of extensions: 169120
Number of successful extensions: 337
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)