Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_N14
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43420.1 68418.m05309 zinc finger (C3HC4-type RING finger) fa...    29   3.6  
At4g01210.1 68417.m00159 glycosyltransferase family protein 1 co...    28   6.2  
At5g22990.1 68418.m02687 zinc finger (C2H2 type) family protein ...    27   8.2  
At3g48250.1 68416.m05266 pentatricopeptide (PPR) repeat-containi...    27   8.2  

>At5g43420.1 68418.m05309 zinc finger (C3HC4-type RING finger)
           family protein low similarity to RING-H2 zinc finger
           protein ATL4 [Arabidopsis thaliana] GI:4928399; contains
           Pfam profile PF00097: Zinc finger, C3HC4 type (RING
           finger)
          Length = 375

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +3

Query: 150 ESKERRQIPLQMCLQGYKVSHFRCDEHPIKIQNGTLAILHKDCTYIWLQGXAKVML 317
           E +E+R     +CL  ++      DE  ++I      + H DC  +WLQ  A   L
Sbjct: 129 EEEEKRSQECSVCLSEFQ------DEEKLRIIPNCSHLFHIDCIDVWLQNNANCPL 178


>At4g01210.1 68417.m00159 glycosyltransferase family protein 1
            contains Pfam profile: PF00534 Glycosyl transferases
            group 1
          Length = 981

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 344  MMWEQHPNFGRNSILWEEWWRQVVKLTLQDHLPVGADT-RSLGNTL 478
            +M EQH    R   +W +W+      T+ + L   AD+ R +G+ L
Sbjct: 863  LMQEQHKQKNRRGKMWVKWFDYTTLKTMDEDLAEEADSDRRVGHWL 908


>At5g22990.1 68418.m02687 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 324

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -3

Query: 376 PSKIRMLFPHHFKVFPHLILSITFAXPCN-HMYV 278
           P+ +  +FPH   +FP  +   +F+   N H YV
Sbjct: 167 PTPLNTIFPHQASIFPRNVDKFSFSPKQNPHQYV 200


>At3g48250.1 68416.m05266 pentatricopeptide (PPR) repeat-containing
           protein vacontains Pfam profile PF01535: PPR repeat
          Length = 621

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -3

Query: 412 HLSPPFFPEDRIPSKIRMLF--PHHFKVFPHL 323
           H+   F+ E R+     +LF  PHHFK  P +
Sbjct: 582 HVIEAFYREGRLTDAKNLLFICPHHFKTHPKI 613


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,916,784
Number of Sequences: 28952
Number of extensions: 226431
Number of successful extensions: 476
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)