Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_N13
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.02 |||NAD dependent epimerase/dehydratase family protein...    29   0.23 
SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein S30|S...    26   2.1  
SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein S30|Schizosa...    26   2.1  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   4.8  
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    25   4.8  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    25   6.4  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    24   8.5  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    24   8.5  

>SPBC2A9.02 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 29.5 bits (63), Expect = 0.23
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 232 WXGVHWSDARNAFVLLLQLAMKTLLYHYV 146
           W  VH +DA N FVL L+      +YH V
Sbjct: 192 WPAVHRTDAANLFVLALEKETAGSIYHAV 220


>SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein
          S30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 61

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = -1

Query: 63 KCTGSLARAGKVKGPNP 13
          K  GSLARAGKVK   P
Sbjct: 3  KVHGSLARAGKVKSQTP 19


>SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein
          S30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 61

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = -1

Query: 63 KCTGSLARAGKVKGPNP 13
          K  GSLARAGKVK   P
Sbjct: 3  KVHGSLARAGKVKSQTP 19


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +1

Query: 307 TSKKKHACRSTLQDHGHSCFLCEWPNGTRPVAP 405
           T    +    T  D G   +  EW +G  P+AP
Sbjct: 67  TRSSDNTTSDTEDDSGEDSYQVEWESGKDPLAP 99


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 13/52 (25%), Positives = 19/52 (36%)
 Frame = +1

Query: 250 CRLPSDMQLHIVKSYQPSLTSKKKHACRSTLQDHGHSCFLCEWPNGTRPVAP 405
           C L   +  H+ +SY      K       +       CF C+ P    PV+P
Sbjct: 328 CSLVLILSTHLARSYHHLFPLKNWSEIPWSANPKSTHCFACQLPFPKPPVSP 379


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 17  FGPLTLPARAKDPVHF 64
           +GPL  P RA DP HF
Sbjct: 85  WGPLLGPGRAFDPSHF 100


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -3

Query: 316 FYLSG-LVDKILQYAVAYQRAIDTRPGRQWXGVHWSDARNAFVLLLQLAMKTLL 158
           FYLS  +V+ +LQY   +QR +     R++  +  S+  N+F    +L    L+
Sbjct: 256 FYLSNFIVNGVLQYRKEFQRWLRLYEFRRFGLIGLSNFVNSFSSFFELISHFLI 309


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 91  LVQMMRAHRQRHESSKGAPHNDRVRSSSP 177
           L ++++ HR+R E  K A     VR +SP
Sbjct: 136 LNEVLKEHRKRREDDKNAIMTMVVREASP 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,790,746
Number of Sequences: 5004
Number of extensions: 33884
Number of successful extensions: 86
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)