Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_N13
(423 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0006 + 17008799-17009417,17010035-17010162,17010425-170106... 31 0.38
01_06_1218 - 35489224-35489408,35489497-35489626 29 1.5
01_01_1184 - 9430623-9430658,9430945-9431013,9431104-9431270,943... 29 1.5
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 28 3.6
06_01_0507 + 3655570-3655573,3655648-3655832 27 4.7
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 27 8.2
03_06_0432 + 33879916-33880348,33881620-33881936,33882195-338822... 27 8.2
03_05_0617 + 26163161-26163595,26163678-26164202 27 8.2
>01_05_0006 +
17008799-17009417,17010035-17010162,17010425-17010650,
17010792-17010925,17010988-17011161,17011234-17012238
Length = 761
Score = 31.1 bits (67), Expect = 0.38
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +1
Query: 196 MRSLHLTNGLLXIDVQ-DVCRLPSDMQLHIVKSYQPSLTSKKKHA 327
M + HLT+ L + Q + RLPS+++L + QP+ +K++ A
Sbjct: 1 MATSHLTSRSLLVQAQYPISRLPSNLRLSLSHHKQPAAVAKRRRA 45
>01_06_1218 - 35489224-35489408,35489497-35489626
Length = 104
Score = 29.1 bits (62), Expect = 1.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 322 HACRSTLQDHGHSCFLCEW 378
H CR T QDHG+ C+W
Sbjct: 69 HKCRETCQDHGNVDGRCKW 87
>01_01_1184 -
9430623-9430658,9430945-9431013,9431104-9431270,
9431596-9431693,9431790-9431929,9432911-9433120,
9434314-9434832
Length = 412
Score = 29.1 bits (62), Expect = 1.5
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -3
Query: 355 DHDPVEXTCRHAFFYLSGLVDKILQYAVAYQRAIDTRPGRQW 230
+HDP E A Y G + LQY +YQ A+ G+ W
Sbjct: 345 NHDPRELRDYAALLYHCGYYEDCLQYLASYQTAV---AGQHW 383
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 27.9 bits (59), Expect = 3.6
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Frame = +2
Query: 8 LGGFGPLTLPARA-KDPV---HFTTKQWHC 85
+GG G TL DP+ HF K WHC
Sbjct: 438 MGGLGKTTLAKMVYNDPIVQKHFQLKMWHC 467
>06_01_0507 + 3655570-3655573,3655648-3655832
Length = 62
Score = 27.5 bits (58), Expect = 4.7
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -1
Query: 63 KCTGSLARAGKVKGPNP 13
K GSLARAGKV+G P
Sbjct: 3 KVHGSLARAGKVRGQTP 19
>12_02_0973 +
24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 26.6 bits (56), Expect = 8.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 136 KGAPHNDRVRSSSPTAARVRMRSLHLT 216
KG H D S + T A VR+ +LHLT
Sbjct: 103 KGNDHTDCTVSLTGTTASVRLDNLHLT 129
>03_06_0432 +
33879916-33880348,33881620-33881936,33882195-33882281,
33882690-33883253
Length = 466
Score = 26.6 bits (56), Expect = 8.2
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = -2
Query: 263 EGNRHTSWTSMXRSPLVRCKERIRTLAAVGDEDLTLSLCGAPLDDSCRC 117
+G H W + R L + R ++ +G D+TL P +C+C
Sbjct: 336 KGAMHRVWPAGNRELLFEIRLRDKSGVGIGTTDITLECTLWPEYHACKC 384
>03_05_0617 + 26163161-26163595,26163678-26164202
Length = 319
Score = 26.6 bits (56), Expect = 8.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 267 IRGQSTHVLDVNGQESIGQMQGTHSYSCC 181
+RG+ HVLD + + G + SCC
Sbjct: 221 LRGELEHVLDAHARRGADHGDGDDAESCC 249
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,551,471
Number of Sequences: 37544
Number of extensions: 250238
Number of successful extensions: 693
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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